View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_212 (Length: 250)
Name: NF1139_low_212
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_212 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 24760983 - 24761187
Alignment:
| Q |
1 |
tacatcaataccttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggtttgttaagacaattagagtttacctgtttc |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24760983 |
tacatcaatagcttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggtttgttaaggcaattagagtttacctgtttc |
24761082 |
T |
|
| Q |
101 |
tgccattagcactatcaatcattgtttaattttatctctcaaagtataaattcgtgcatcttatcgtgataatttattcataaaaaatcagtatagttta |
200 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24761083 |
tgccattagcactatcaatcatcgtttaattttatctctcaaagtataaattcgtgcatcttatcgtgataatttattcataaaaaatcagtatagttta |
24761182 |
T |
|
| Q |
201 |
tttgc |
205 |
Q |
| |
|
||||| |
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|
| T |
24761183 |
tttgc |
24761187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 24761512 - 24761556
Alignment:
| Q |
161 |
ttatcgtgataatttattcataaaaaatcagtatagtttatttgc |
205 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
24761512 |
ttatcgtaataatttattcataaaaaatcagtatagtttatttgc |
24761556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 52128418 - 52128622
Alignment:
| Q |
1 |
tacatcaataccttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggtttgttaagacaattagagtttacctgtttc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
52128418 |
tacatcaatagcttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggtttgttaaggcaattagagtttacctgtttc |
52128517 |
T |
|
| Q |
101 |
tgccattagcactatcaatcattgtttaattttatctctcaaagtataaattcgtgcatcttatcgtgataatttattcataaaaaatcagtatagttta |
200 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52128518 |
tgccattagcactatcaatcatcgtttaattttatctctcaaagtataaattcgtgcatcttatcgtgataatttattcataaaaaatcagtatagttta |
52128617 |
T |
|
| Q |
201 |
tttgc |
205 |
Q |
| |
|
||||| |
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|
| T |
52128618 |
tttgc |
52128622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 52128947 - 52128991
Alignment:
| Q |
161 |
ttatcgtgataatttattcataaaaaatcagtatagtttatttgc |
205 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52128947 |
ttatcgtaataatttattcataaaaaatcagtatagtttatttgc |
52128991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 4160119 - 4160025
Alignment:
| Q |
12 |
cttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggtttgttaagacaattagagtttacctgtttctgccat |
106 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||| ||||| |
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| T |
4160119 |
cttctttaaatacttcagcttaaccatgttgatcattgcttctatttgctacttctggtttgttaaagcaattatagtttacctgtttccgccat |
4160025 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 54654243 - 54654301
Alignment:
| Q |
12 |
cttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggt |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
54654243 |
cttcttttaatacttcagcttaaccatattgatcactgcttctatttgctacttctggt |
54654301 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 3004196 - 3004254
Alignment:
| Q |
12 |
cttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggt |
70 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
3004196 |
cttcttttaatacttcagcttaatcatattgatcactgcttctatttgctacttctggt |
3004254 |
T |
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