View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_215 (Length: 248)

Name: NF1139_low_215
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_215
NF1139_low_215
[»] chr1 (11 HSPs)
chr1 (1-217)||(10996936-10997152)
chr1 (21-142)||(35109458-35109581)
chr1 (1-203)||(8281306-8281513)
chr1 (13-121)||(32736909-32737017)
chr1 (47-127)||(918427-918507)
chr1 (60-122)||(48382441-48382503)
chr1 (34-117)||(17345453-17345536)
chr1 (48-147)||(11032268-11032369)
chr1 (12-122)||(22819504-22819614)
chr1 (1-59)||(11031375-11031433)
chr1 (13-69)||(32889568-32889624)
[»] scaffold0016 (1 HSPs)
scaffold0016 (33-145)||(102427-102541)
[»] chr6 (7 HSPs)
chr6 (32-127)||(1115036-1115131)
chr6 (32-144)||(30518060-30518174)
chr6 (13-76)||(31936698-31936761)
chr6 (54-123)||(21247055-21247124)
chr6 (51-108)||(16569047-16569106)
chr6 (4-127)||(31076841-31076968)
chr6 (13-108)||(31979602-31979697)
[»] chr8 (10 HSPs)
chr8 (42-205)||(8863568-8863734)
chr8 (13-201)||(9054750-9054942)
chr8 (1-122)||(7493075-7493195)
chr8 (4-122)||(5990466-5990583)
chr8 (42-122)||(3051195-3051275)
chr8 (42-108)||(6813772-6813839)
chr8 (42-123)||(34477164-34477242)
chr8 (51-122)||(30291620-30291693)
chr8 (13-69)||(19752306-19752362)
chr8 (13-69)||(28307690-28307746)
[»] chr2 (10 HSPs)
chr2 (1-127)||(28770676-28770801)
chr2 (13-201)||(2869605-2869798)
chr2 (33-125)||(18674334-18674426)
chr2 (42-122)||(27139877-27139957)
chr2 (21-127)||(15903811-15903916)
chr2 (12-122)||(27149206-27149316)
chr2 (13-69)||(1345454-1345510)
chr2 (33-76)||(12632666-12632709)
chr2 (13-100)||(35397608-35397694)
chr2 (176-205)||(16388551-16388580)
[»] chr3 (10 HSPs)
chr3 (34-190)||(4386851-4387011)
chr3 (18-108)||(25517071-25517161)
chr3 (41-125)||(29100232-29100316)
chr3 (1-122)||(21353637-21353757)
chr3 (35-122)||(5366249-5366336)
chr3 (175-205)||(29100147-29100177)
chr3 (13-69)||(1417393-1417449)
chr3 (13-108)||(3328259-3328355)
chr3 (42-82)||(5797254-5797294)
chr3 (50-122)||(32744518-32744590)
[»] chr4 (10 HSPs)
chr4 (41-205)||(37781850-37782018)
chr4 (40-147)||(873458-873567)
chr4 (4-117)||(34670570-34670682)
chr4 (41-205)||(8114679-8114845)
chr4 (13-127)||(18912276-18912390)
chr4 (51-122)||(39774255-39774327)
chr4 (20-122)||(18377434-18377536)
chr4 (13-122)||(1983214-1983322)
chr4 (13-122)||(5112312-5112421)
chr4 (42-127)||(39593798-39593882)
[»] scaffold0002 (1 HSPs)
scaffold0002 (2-127)||(14752-14878)
[»] chr5 (10 HSPs)
chr5 (14-108)||(33030854-33030948)
chr5 (1-122)||(2630306-2630426)
chr5 (20-122)||(6741927-6742029)
chr5 (13-122)||(11181745-11181854)
chr5 (42-82)||(3651615-3651655)
chr5 (46-125)||(30899939-30900018)
chr5 (52-108)||(12084127-12084184)
chr5 (49-119)||(33831692-33831763)
chr5 (42-123)||(34842677-34842758)
chr5 (13-108)||(42127323-42127419)
[»] chr7 (8 HSPs)
chr7 (34-122)||(3047330-3047417)
chr7 (47-201)||(28617172-28617330)
chr7 (1-122)||(5817172-5817292)
chr7 (43-116)||(761255-761328)
chr7 (51-122)||(38671304-38671376)
chr7 (13-108)||(9235495-9235591)
chr7 (13-108)||(20284177-20284273)
chr7 (13-108)||(23402926-23403022)
[»] scaffold0076 (1 HSPs)
scaffold0076 (49-127)||(15937-16015)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10997152 - 10996936
Alignment:
Q  1 ttcctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10997152 ttcctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaattt 10997053  T
Q  101 cttgtaacatatttgtatcactcttattagtggatcaaagagttgctttcaccaagagtaggtcattctaaactgaactgggtaaacaatattggtgtgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10997052 cttgtaacatatttgtatcactcttattagtggatcaaagagttgctttcaccaagagtaggtcattctaaaccgaactgggtaaacaatattggtgtgt 10996953  T
Q  201 tgtttaattttctccac 217  Q
    |||||||||||||||||    
T  10996952 tgtttaattttctccac 10996936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 35109458 - 35109581
Alignment:
Q  21 taggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatca 120  Q
    |||||||||  ||||||| | |||||||||||| ||||||||||||| |||||||| ||||| | |||||||| |||||||||||||| ||||||||||     
T  35109458 taggattcattgtgagtgtgtgtgacttgaaaattgggtagaaattaaggtttgttctttgtgagcttttaagctaatttcttgtaacctatttgtatct 35109557  T
Q  121 ctcttat--tagtggatcaaagag 142  Q
     ||||||  |||||||||| ||||    
T  35109558 atcttatcatagtggatcagagag 35109581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 8281513 - 8281306
Alignment:
Q  1 ttcctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaattt 100  Q
    ||||||||||||||| || || |||||||  ||||||| ||||||||| || ||| | ||||||||||  |||||| ||||| | |  ||| ||||||||    
T  8281513 ttcctttagtgtttt-ctctttggattcattgtgagtgcgggtgacttaaataattgatagaaattagaatttgttctttgtgagcgattatgttaattt 8281415  T
Q  101 cttgtaacatatttgtatcactcttat--tagtggatcaaagagtt----gctttcaccaagagtaggtcattctaaactgaactgggtaaacaatattg 194  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||     |||||  | | ||||||||||| |  |  |||||||||||||||| |||    
T  8281414 cttgtaacatatttgtatcattcttatcatagtggatcagagagttattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttg 8281315  T
Q  195 gtgtgttgt 203  Q
    |||||||||    
T  8281314 gtgtgttgt 8281306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 32736909 - 32737017
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatat 112  Q
    |||||| ||||||||||  |||||||  | |||||||||||||||||||||||||||||||||| ||| | | |||||||| |||||| ||||||| | |    
T  32736909 ttttctcttaggattcattgtgagtgtcgatgacttgaaaaatgggtagaaattagggtttgttctttatgaacttttaagctaattttttgtaacctct 32737008  T
Q  113 ttgtatcac 121  Q
    |||||||||    
T  32737009 ttgtatcac 32737017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 918427 - 918507
Alignment:
Q  47 ttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat 127  Q
    ||||||||||||||||||||| |||||||| ||||| |  || |||| ||||||||||||| || ||||||||||||||||    
T  918427 ttgaaaaatgggtagaaattatggtttgttctttgtgagtttgtaagataatttcttgtaatatctttgtatcactcttat 918507  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 48382441 - 48382503
Alignment:
Q  60 agaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcact 122  Q
    ||||||||||||||| | ||||| | ||| ||||||||||||||||||| |||||||||||||    
T  48382441 agaaattagggtttgatctttgtgaacttgtaagttaatttcttgtaacctatttgtatcact 48382503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 17345453 - 17345536
Alignment:
Q  34 gagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgta 117  Q
    ||||| ||||||||| |||||||||||||||||||| |||||| |||||   || ||| | |||||||||||| || |||||||    
T  17345453 gagtgtgggtgacttaaaaaatgggtagaaattaggttttgttctttgtgggctcttatgctaatttcttgtagcacatttgta 17345536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 11032268 - 11032369
Alignment:
Q  48 tgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat--tagtggatcaaagagttg 145  Q
    |||||||||||||||||||| | |||||| ||||| |  ||||||  |||||||||||||| | ||| ||||||| ||||  |||||||||| | |||||    
T  11032268 tgaaaaatgggtagaaattatgttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagttg 11032367  T
Q  146 ct 147  Q
    ||    
T  11032368 ct 11032369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 22819614 - 22819504
Alignment:
Q  12 tttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacata 111  Q
    ||||||| ||||||||||  | ||||| |||||||||||||||||| ||||||||| |  || || ||||| | ||   ||| ||||||||||||||  |    
T  22819614 tttttctcttaggattcattgagagtgtgggtgacttgaaaaatggttagaaattatgtcttattctttgtgagctaaaaagctaatttcttgtaactca 22819515  T
Q  112 tttgtatcact 122  Q
    |||||||||||    
T  22819514 tttgtatcact 22819504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11031375 - 11031433
Alignment:
Q  1 ttcctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggt 59  Q
    |||||||||||||||||| ||||||| ||  ||||||| |  |||||||||||||||||    
T  11031375 ttcctttagtgtttttctcttaggatacattgtgagtgtgaatgacttgaaaaatgggt 11031433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 32889624 - 32889568
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagg 69  Q
    |||||| ||||||||||  | ||||| ||||||  ||||||||||||||||||||||    
T  32889624 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaattagg 32889568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 102427 - 102541
Alignment:
Q  33 tgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat--tag 130  Q
    |||||| | ||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||| | ||||||||||||||||  | |    
T  102427 tgagtgtgtgtgacttgaaaaatgggtagaaattagggtttgttttttgtgagcttttaagataatttcttgtaacctctttgtatcactcttatcattg 102526  T
Q  131 tggatcaaagagttg 145  Q
    ||||||| |||||||    
T  102527 tggatcagagagttg 102541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 1115036 - 1115131
Alignment:
Q  32 gtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat 127  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||| | | |||||||||| |||||||||||| ||||||||||| ||||||    
T  1115036 gtgagtgtgggtgacttgaaaaatggatagaaattagggtttgttatttttgagcttttaagttgatttcttgtaacctatttgtatcattcttat 1115131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 30518060 - 30518174
Alignment:
Q  32 gtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat--ta 129  Q
    ||||||| |||| ||||||||||| ||||||||||| |||||||| ||||| | ||||||||||| |||| |||||| | ||||||||||||||||  ||    
T  30518060 gtgagtgtgggtaacttgaaaaataggtagaaattaaggtttgttctttgtgaacttttaagttagtttcatgtaacctctttgtatcactcttatcata 30518159  T
Q  130 gtggatcaaagagtt 144  Q
    |||||||| ||||||    
T  30518160 gtggatcagagagtt 30518174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 31936761 - 31936698
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgtt 76  Q
    |||||| ||||||||||  | ||||| ||||||  |||||||||||||||||||||| ||||||    
T  31936761 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaattaggatttgtt 31936698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 21247055 - 21247124
Alignment:
Q  54 atgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactc 123  Q
    ||||||||||||||| |||  || || || |||||||||| |||||||||||||| | ||||||| ||||    
T  21247055 atgggtagaaattagagttctttcttagtgatcttttaagctaatttcttgtaacctttttgtattactc 21247124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 16569047 - 16569106
Alignment:
Q  51 aaaatgggtagaaattagggtttgttatttgttatct--tttaagttaatttcttgtaac 108  Q
    ||||||||||||||||||| |||||| ||||| | ||  |||||| ||||||||||||||    
T  16569047 aaaatgggtagaaattaggttttgttctttgtgagcttgtttaagctaatttcttgtaac 16569106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 31076841 - 31076968
Alignment:
Q  4 ctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaa-----aatgggtagaaattagggtttgttatttgttatcttttaagttaat 98  Q
    |||||||||||| || ||||||||||  |||| || |||||||||||||     ||||| || ||||||||  ||||| ||||| | || ||||| ||||    
T  31076841 ctttagtgtttt-ctcttaggattcatagtgattgtgggtgacttgaaattaaaaatggataaaaattaggtcttgttctttgtgaactcttaagctaat 31076939  T
Q  99 ttcttgtaacatatttgtatcactcttat 127  Q
    || |||||||  |||||||||||| ||||    
T  31076940 ttattgtaacccatttgtatcacttttat 31076968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 31979697 - 31979602
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgtt-atttgttatcttttaagttaatttcttgtaac 108  Q
    |||||| ||||||||||  | ||||| |||||||   ||||||||||||||||||||  |||||  ||||| | ||| |||||||||||||||||||    
T  31979697 ttttctcttaggattcattgagagtgtgggtgacac-aaaaatgggtagaaattaggtcttgttcttttgtaagcttataagttaatttcttgtaac 31979602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 8863568 - 8863734
Alignment:
Q  42 gtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactct---tattagtggatcaa 138  Q
    |||||||||||||||||||||||||| |||||||| | ||  | ||||||||||||||||||||||| | |||||||||||||   |  |||||||||||    
T  8863568 gtgacttgaaaaatgggtagaaattaaggtttgttctgtg--agcttttaagttaatttcttgtaacctctttgtatcactctttctcatagtggatcaa 8863665  T
Q  139 agagttgctttcacca--agagtaggtcattctaaactgaactgggtaaacaatattggtgtgttgttt 205  Q
    |||||| || |  |||  ||||||||| ||| | ||| |||||||| ||||||||||| ||||||||||    
T  8863666 agagttactatttccatcagagtaggttattttgaaccgaactgggaaaacaatattgatgtgttgttt 8863734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 9054750 - 9054942
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatat 112  Q
    |||||| ||||||||||  | ||||| | |||||||||||||||||||||||||||  |||||| |||||   |||||||| ||||||||||||||   |    
T  9054750 ttttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattagattttgttctttgtgcgcttttaagctaatttcttgtaaccact 9054849  T
Q  113 ttgtatcac--tcttattagtggatcaaagagttgctttcac--caagagtaggtcattctaaactgaactgggtaaacaatattggtgtgtt 201  Q
    |||||||||  || | ||||||||| | |||| |||| || |  | ||||||||||||  |  ||||||| | ||||| ||||||||||||||    
T  9054850 ttgtatcactttcatcttagtggattagagagctgctctctcctccagagtaggtcatattggactgaacagagtaaataatattggtgtgtt 9054942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7493075 - 7493195
Alignment:
Q  1 ttcctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaattt 100  Q
    |||||||||||||||| | |||||||| |  | ||||| |||||||||||||||  ||||||||||||| |||||| | ||| | |||||| ||||||||    
T  7493075 ttcctttagtgttttt-tcttaggatttattgagagtgtgggtgacttgaaaaacaggtagaaattaggttttgttctgtgtgagcttttatgttaattt 7493173  T
Q  101 cttgtaacatatttgtatcact 122  Q
    ||| |||| | |||||||||||    
T  7493174 cttataacttctttgtatcact 7493195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 5990466 - 5990583
Alignment:
Q  4 ctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttctt 103  Q
    |||||||||||| || ||||||||||  |  |||| ||||||||||||||||||||  |||| |||   |||| ||||| | |||||||| |||||||||    
T  5990466 ctttagtgtttt-ctcttaggattcattgaaagtgtgggtgacttgaaaaatgggtgaaaatgaggtcgtgttctttgtgagcttttaagctaatttctt 5990564  T
Q  104 gtaacatatttgtatcact 122  Q
    ||||||| |||||||||||    
T  5990565 gtaacatctttgtatcact 5990583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 3051275 - 3051195
Alignment:
Q  42 gtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcact 122  Q
    ||||| |||||||||||||||||||| | |||||| ||||| | || ||| | ||||||||||||||  ||||||||||||    
T  3051275 gtgacatgaaaaatgggtagaaattaagttttgttctttgtgagctcttatgctaatttcttgtaactcatttgtatcact 3051195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 6813839 - 6813772
Alignment:
Q  42 gtgacttgaaaaatgggtag-aaattagggtttgttatttgttatcttttaagttaatttcttgtaac 108  Q
    |||||||||||||||||||| |||||||| |||||| ||||| | |||  ||| ||||||||||||||    
T  6813839 gtgacttgaaaaatgggtagaaaattaggttttgttctttgtgagcttgcaagctaatttcttgtaac 6813772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 34477164 - 34477242
Alignment:
Q  42 gtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactc 123  Q
    |||||||||||||||||| ||||||||   ||||| ||||| |  || |||||||||||||| |||| | ||||||||||||    
T  34477164 gtgacttgaaaaatgggtcgaaattag---ttgttctttgtgagtttgtaagttaatttcttttaacctctttgtatcactc 34477242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 30291620 - 30291693
Alignment:
Q  51 aaaatgggtagaaattagggtttgttatttgttatct--tttaagttaatttcttgtaacatatttgtatcact 122  Q
    ||||||||||||||||||| |||||| ||||| | ||  || ||| ||||||||||||||  ||||||||||||    
T  30291620 aaaatgggtagaaattaggttttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatcact 30291693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 19752306 - 19752362
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagg 69  Q
    |||||| ||||||||||  | ||||| ||||||  ||||||||||||||||||||||    
T  19752306 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaattagg 19752362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 28307746 - 28307690
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagg 69  Q
    |||||||||||||||||  | ||||| ||||||||||| ||||| ||||||| ||||    
T  28307746 ttttcttttaggattcagtgagagtgtgggtgacttgagaaatgtgtagaaagtagg 28307690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 28770676 - 28770801
Alignment:
Q  1 ttcctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaattt 100  Q
    ||||||||||||||| || ||||||||||  | ||||| |  |||||||||||||||||||||||||| ||||||| ||||| | |||||||| ||||||    
T  28770676 ttcctttagtgtttt-ctcttaggattcattgcgagtgtgtatgacttgaaaaatgggtagaaattagagtttgttctttgtgagcttttaagctaattt 28770774  T
Q  101 cttgtaacatatttgtatcactcttat 127  Q
    ||||||| || ||||||||| ||||||    
T  28770775 cttgtaatatctttgtatcattcttat 28770801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 2869605 - 2869798
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagg-gtttgttatttgttatcttttaagttaatttcttgtaacata 111  Q
    |||||| ||||||||||  | ||||| ||||||||||||||||||||||||||||||  |||||| ||||| | |||||||| ||||||||||||||       
T  2869605 ttttctcttaggattcattgagagtgtgggtgacttgaaaaatgggtagaaattaggtttttgttctttgtgagcttttaagctaatttcttgtaactcc 2869704  T
Q  112 tttgtatcac--tcttattagtggatcaaagagtt--gctttcaccaagagtaggtcattctaaactgaactgggtaaacaatattggtgtgtt 201  Q
    ||||||||||  || | |||||||||   |||| |   || || || ||||||||||||  |  || |||||||||||||||||||||||||||    
T  2869705 tttgtatcactttcatcttagtggattggagagctactctctcccctagagtaggtcatattggaccgaactgggtaaacaatattggtgtgtt 2869798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 18674334 - 18674426
Alignment:
Q  33 tgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactctt 125  Q
    |||||| |||||||||||||||||| ||||||||| |||||||| ||||| | |||||||  ||||||||||||||   || |||||||||||    
T  18674334 tgagtgtgggtgacttgaaaaatggatagaaattatggtttgttctttgtgagcttttaaactaatttcttgtaaccccttggtatcactctt 18674426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 27139957 - 27139877
Alignment:
Q  42 gtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcact 122  Q
    ||||||||||| ||| ||||||||||||||||||  ||||| | |||| || |||||||| |||||||| |||||||||||    
T  27139957 gtgacttgaaatatgtgtagaaattagggtttgtactttgtgagctttaaatttaatttcctgtaacatttttgtatcact 27139877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 15903811 - 15903916
Alignment:
Q  21 taggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatca 120  Q
    |||||||||  | ||||| |||||||||||||||||||||||||||||  |||||| ||||| | ||| |||| | ||||||||||||   |||||||||    
T  15903811 taggattcattgagagtgtgggtgacttgaaaaatgggtagaaattagaatttgttctttgtgagcttgtaagct-atttcttgtaacccctttgtatca 15903909  T
Q  121 ctcttat 127  Q
    || ||||    
T  15903910 cttttat 15903916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 27149206 - 27149316
Alignment:
Q  12 tttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacata 111  Q
    ||||||| ||||||||||  ||||||| ||||||||| |||||  ||||||| ||| |  ||||| ||||| | |||||||| ||||||||||| ||       
T  27149206 tttttctcttaggattcattgtgagtgtgggtgacttaaaaaacaggtagaagttaagtcttgttctttgtgagcttttaaggtaatttcttgttacccc 27149305  T
Q  112 tttgtatcact 122  Q
    |||||||||||    
T  27149306 tttgtatcact 27149316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 1345454 - 1345510
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagg 69  Q
    |||||||||| ||||||  | ||||| ||||||| ||||||||||||||||||||||    
T  1345454 ttttcttttatgattcattgagagtgggggtgacatgaaaaatgggtagaaattagg 1345510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 12632709 - 12632666
Alignment:
Q  33 tgagtgagggtgacttgaaaaatgggtagaaattagggtttgtt 76  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||    
T  12632709 tgagtgtgggtgacttgaaaaatggatagaagttagggtttgtt 12632666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 35397694 - 35397608
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaattt 100  Q
    |||||| ||||||||||  | || || |||||||||||||||||| ||||||||| |||||||| ||| | | |||||||| ||||||    
T  35397694 ttttctcttaggattcattgagattgtgggtgacttgaaaaatggatagaaatta-ggtttgttctttatgaccttttaagctaattt 35397608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 16388551 - 16388580
Alignment:
Q  176 aactgggtaaacaatattggtgtgttgttt 205  Q
    ||||||||||||||||||||||||||||||    
T  16388551 aactgggtaaacaatattggtgtgttgttt 16388580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 4386851 - 4387011
Alignment:
Q  34 gagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactctta--ttagt 131  Q
    ||||| ||||||||||||||||| |||||||||||| |||||| ||||| | |||||||| ||||||||||||||  |||||||||||| |||  ||| |    
T  4386851 gagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagcttttaagctaatttcttgtaacccatttgtatcacttttatcttatt 4386950  T
Q  132 ggatcaaagagttg--ctttcaccaagagtaggtcattctaaactgaactgggtaaacaat 190  Q
    ||||   |||| ||  || || || |||||||||||| || |||| |||||||||||||||    
T  4386951 ggattggagagctgctctctcccccagagtaggtcatactgaactaaactgggtaaacaat 4387011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 25517161 - 25517071
Alignment:
Q  18 ttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaac 108  Q
    ||||||| ||||  ||||||| ||||||||||||||||  ||||||||||||||||||| ||||| | |||||||| ||||||||| ||||    
T  25517161 ttttagggttcactgtgagtgtgggtgacttgaaaaataagtagaaattagggtttgttctttgtgagcttttaagctaatttcttataac 25517071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 29100316 - 29100232
Alignment:
Q  41 ggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactctt 125  Q
    |||||||||||||| | ||||||||||||||||||| ||||| |  ||||||| ||||||||| |||| | ||||||||||||||    
T  29100316 ggtgacttgaaaaacgagtagaaattagggtttgttctttgtgagtttttaagctaatttcttataacctctttgtatcactctt 29100232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 21353757 - 21353637
Alignment:
Q  1 ttcctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaattt 100  Q
    ||||||||||||||| || ||| ||||||  || |||| | ||| | |||||||||||||||||||||| | |||| ||||| | || ||  | ||||||    
T  21353757 ttcctttagtgtttt-ctcttaagattcattgtaagtgtgagtggcatgaaaaatgggtagaaattaggttgtgttctttgtgagctcttgtgctaattt 21353659  T
Q  101 cttgtaacatatttgtatcact 122  Q
    ||||||||  ||||||||||||    
T  21353658 cttgtaactcatttgtatcact 21353637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 5366249 - 5366336
Alignment:
Q  35 agtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcact 122  Q
    |||| |||||||| |||||| |||||||||||| | ||| ||  |||| |  ||||||| |||||||||||||| | |||||||||||    
T  5366249 agtgtgggtgactagaaaaaagggtagaaattaagattttttcattgtgagattttaagataatttcttgtaacctctttgtatcact 5366336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 29100177 - 29100147
Alignment:
Q  175 gaactgggtaaacaatattggtgtgttgttt 205  Q
    |||||||||||||||||||||||||||||||    
T  29100177 gaactgggtaaacaatattggtgtgttgttt 29100147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 1417393 - 1417449
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagg 69  Q
    |||||| ||||||||||  | ||||| ||||||  ||||||||||||||||||||||    
T  1417393 ttttctcttaggattcattgggagtgtgggtgatatgaaaaatgggtagaaattagg 1417449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 3328259 - 3328355
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgtt-atttgttatcttttaagttaatttcttgtaac 108  Q
    |||||| ||||||| ||  | ||||| ||||||  ||||||||||||||||||||||  |||||  ||||| | ||| |||| ||||||||||||||    
T  3328259 ttttctcttaggatacattgagagtgtgggtgatatgaaaaatgggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac 3328355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 5797294 - 5797254
Alignment:
Q  42 gtgacttgaaaaatgggtagaaattagggtttgttatttgt 82  Q
    ||||||||||||||||  ||||||||| |||||||||||||    
T  5797294 gtgacttgaaaaatggaaagaaattagagtttgttatttgt 5797254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 32744590 - 32744518
Alignment:
Q  50 aaaaatgggtagaaattagggtttgttatttgttatctt--ttaagttaatttcttgtaacatatttgtatcact 122  Q
    |||||||||||||||||||  |||||| ||||| | |||  ||||| ||||||||||||||  ||||||||||||    
T  32744590 aaaaatgggtagaaattag--tttgttctttgtgagcttgtttaagctaatttcttgtaactcatttgtatcact 32744518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 37782018 - 37781850
Alignment:
Q  41 ggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat--tagtggatcaa 138  Q
    ||||||||||||||||||||||||||| | |||||| ||||| |  ||||||| |||||||||||||| | ||||||||||| ||||  ||||||||       
T  37782018 ggtgacttgaaaaatgggtagaaattaagatttgttctttgtgagtttttaagctaatttcttgtaacctctttgtatcacttttattatagtggattgg 37781919  T
Q  139 agagttgctttcac-caagagtaggtcat-tctaaactgaactgggtaaacaatattggtgtgttgttt 205  Q
    |||||| || || | |   |||||||||| | ||||| |||||||||||||||||||||| ||||||||    
T  37781918 agagttactctctctccgaagtaggtcatatttaaaccgaactgggtaaacaatattggtttgttgttt 37781850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 873458 - 873567
Alignment:
Q  40 gggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat--tagtggatca 137  Q
    |||||||| |||| ||| |||||||||||| |||||||||||  | ||||||||||||||||||||||| |||| |||||| ||| ||  |||||||||     
T  873458 gggtgactcgaaatatgagtagaaattaggatttgttatttgcgagcttttaagttaatttcttgtaacctattggtatcattctaatcatagtggatcg 873557  T
Q  138 aagagttgct 147  Q
     |||||||||    
T  873558 gagagttgct 873567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 34670570 - 34670682
Alignment:
Q  4 ctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttctt 103  Q
    |||||||||||| || ||||||||||  ||||||| | |||||||||||||||| ||||||||| | |||||| ||||| | || ||||| |||||||||    
T  34670570 ctttagtgtttt-ctcttaggattcattgtgagtgtgagtgacttgaaaaatggatagaaattatgatttgttctttgtgagctattaagctaatttctt 34670668  T
Q  104 gtaacatatttgta 117  Q
    ||||| | ||||||    
T  34670669 gtaacctctttgta 34670682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 8114679 - 8114845
Alignment:
Q  41 ggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat--tagtggatcaa 138  Q
    ||||||||||||||||| || ||||||||||||||| ||||| |  || |||| | |||||||||||| ||||| ||||| ||||||  ||||||||       
T  8114679 ggtgacttgaaaaatggatacaaattagggtttgttctttgtgagattataag-tgatttcttgtaacctatttatatcattcttatcatagtggattgg 8114777  T
Q  139 agagttgctttcac-caagagtaggtcattctaaactgaactgggtaaacaatattggtgtgttgttt 205  Q
    ||||||| | || | | | ||||| ||||| || || ||| | |||||||||||||||||||||||||    
T  8114778 agagttgttctctctcgatagtagatcattatagaccgaattaggtaaacaatattggtgtgttgttt 8114845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 18912276 - 18912390
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatat 112  Q
    |||||| ||||||||||  ||| ||  | |||||||||||||||| || || |||||||||||| ||||| |  || |||  |||||||||||| | | |    
T  18912276 ttttctcttaggattcattgtgggtttgagtgacttgaaaaatggatataatttagggtttgttctttgtgagtttgtaaactaatttcttgtatccttt 18912375  T
Q  113 ttgtatcactcttat 127  Q
    |||||||||||||||    
T  18912376 ttgtatcactcttat 18912390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 39774255 - 39774327
Alignment:
Q  51 aaaatgggtagaaattagggtttgtta-tttgttatcttttaagttaatttcttgtaacatatttgtatcact 122  Q
    ||||| |||||||||||||  |||||  ||||| | |||||||| |||||||||||||| |||||||||||||    
T  39774255 aaaattggtagaaattaggtcttgtttctttgtgagcttttaagctaatttcttgtaacctatttgtatcact 39774327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 18377536 - 18377434
Alignment:
Q  20 ttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttg-ttatttgttatcttttaagttaatttcttgtaacatatttgtat 118  Q
    ||||||||||  || |||| ||||||| |||||| |||||||||||||||| ||| || ||||| | |||||||| | ||||||| ||||  ||||||||    
T  18377536 ttaggattcattgtaagtgtgggtgacatgaaaa-tgggtagaaattagggcttgtttctttgtgagcttttaagctgatttcttataacccatttgtat 18377438  T
Q  119 cact 122  Q
    ||||    
T  18377437 cact 18377434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 1983214 - 1983322
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatat 112  Q
    |||||| ||||||||||  | |||||  |||||||||||||| || ||||||||| | |||||| ||||| | |||  ||| ||||||||||||||   |    
T  1983214 ttttctcttaggattcattgagagtgtaggtgacttgaaaaa-ggatagaaattatgttttgttctttgtgagcttgcaagctaatttcttgtaacccct 1983312  T
Q  113 ttgtatcact 122  Q
    ||||||||||    
T  1983313 ttgtatcact 1983322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 5112421 - 5112312
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatat 112  Q
    |||||| ||||||||||  ||||||| | ||||||| |||||| |||| ||||||||  | ||| ||| | |  ||||||| ||||||||||||||  ||    
T  5112421 ttttctcttaggattcattgtgagtgtgagtgacttaaaaaataggtacaaattaggtctcgttttttatgagtttttaagctaatttcttgtaacccat 5112322  T
Q  113 ttgtatcact 122  Q
    ||||| ||||    
T  5112321 ttgtaacact 5112312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 39593882 - 39593798
Alignment:
Q  42 gtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat 127  Q
    ||||||||| ||| |||||||||||||| ||  || ||||| |  || |||  |||||||||||||| ||||||||||||||||||    
T  39593882 gtgacttgacaaaggggtagaaattagg-ttgattctttgtgagtttgtaaactaatttcttgtaacttatttgtatcactcttat 39593798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 14878 - 14752
Alignment:
Q  2 tcctttagtgtttttcttttaggattcaac--gtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatt 99  Q
    |||||||||||||| || ||||||||||    ||||||| |||||||||||||||| ||||| || ||||||| ||| ||||| | |||||||| |||||    
T  14878 tcctttagtgtttt-ctcttaggattcactttgtgagtgtgggtgacttgaaaaataggtaggaactagggttagttctttgtgagcttttaagctaatt 14780  T
Q  100 tcttgtaacatatttgtatcactcttat 127  Q
    ||| ||||| | ||||||||||||||||    
T  14779 tctcgtaacctctttgtatcactcttat 14752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 33030854 - 33030948
Alignment:
Q  14 tttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaac 108  Q
    ||||| ||||||||||  | ||||| | |||||||||||||||||||||||||| | |||||| ||||| | |||||||| ||||||||||||||    
T  33030854 tttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattatgttttgttctttgtgagcttttaagctaatttcttgtaac 33030948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 2630426 - 2630306
Alignment:
Q  1 ttcctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaattt 100  Q
    ||||||||||||||| || ||||||||||  |||||||||||||||||||||||||  || |||||||| |||||| |||||    ||||||| ||||||    
T  2630426 ttcctttagtgtttt-ctcttaggattcattgtgagtgagggtgacttgaaaaatgtataaaaattaggttttgttctttgtgtgtttttaagctaattt 2630328  T
Q  101 cttgtaacatatttgtatcact 122  Q
     |||||||   |||||||||||    
T  2630327 attgtaacccttttgtatcact 2630306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 6742029 - 6741927
Alignment:
Q  20 ttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatc 119  Q
    ||||||||||  | ||||| ||||||||||||||||| |||||||||||| |||||| ||||| |  ||  ||| |||||||||||||| | ||||||||    
T  6742029 ttaggattcattgagagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagtttgcaagctaatttcttgtaacttctttgtatc 6741930  T
Q  120 act 122  Q
    |||    
T  6741929 act 6741927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 11181745 - 11181854
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgtt-atttgttatcttttaagttaatttcttgtaacata 111  Q
    |||||| ||||||||||  ||||||| ||||||| |||||| |||||||||||||||  ||||| |||||  | |||||| | ||||||||||||||  |    
T  11181745 ttttctcttaggattcattgtgagtgtgggtgacatgaaaa-tgggtagaaattaggtcttgttcatttgagagcttttaggctaatttcttgtaactca 11181843  T
Q  112 tttgtatcact 122  Q
    |||||||||||    
T  11181844 tttgtatcact 11181854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 3651655 - 3651615
Alignment:
Q  42 gtgacttgaaaaatgggtagaaattagggtttgttatttgt 82  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  3651655 gtgacttgaaaaatgggtagaaattagggtttgttctttgt 3651615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 30900018 - 30899939
Alignment:
Q  46 cttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactctt 125  Q
    ||||||||||  ||||||| ||| ||||||| ||||| | ||| || | |||||||||||||| | ||||||||||||||    
T  30900018 cttgaaaaatcagtagaaaatagagtttgttctttgtgagcttgtaggctaatttcttgtaacctctttgtatcactctt 30899939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 12084127 - 12084184
Alignment:
Q  52 aaatgggtagaaattagggtttgttatt-tgttatcttttaagttaatttcttgtaac 108  Q
    ||||||||||||||||||  ||||| || ||| | |||||||||||||||||||||||    
T  12084127 aaatgggtagaaattaggtcttgttcttgtgtaagcttttaagttaatttcttgtaac 12084184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 33831692 - 33831763
Alignment:
Q  49 gaaaaatgggtagaaattagggtttgttatttgttatct--tttaagttaatttcttgtaacatatttgtatc 119  Q
    ||||||||||||||||||| |||||||| ||||| | ||  |||||| ||||||||||||||  |||||||||    
T  33831692 gaaaaatgggtagaaatta-ggtttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatc 33831763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 34842758 - 34842677
Alignment:
Q  42 gtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactc 123  Q
    ||||||||||||||| |||||||||||| | |||| || || | ||| |||| |||  ||||||||| | ||||||||||||    
T  34842758 gtgacttgaaaaatgagtagaaattaggatatgttcttggtgagcttgtaagataacatcttgtaacctctttgtatcactc 34842677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 42127323 - 42127419
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgtt-atttgttatcttttaagttaatttcttgtaac 108  Q
    |||||| ||||||||||  | ||||| ||||||  ||||||||||||||||| ||||  |||||  ||||| | ||| |||| ||||||||||||||    
T  42127323 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaagtaggacttgttcttttgtaagcttataagctaatttcttgtaac 42127419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 3047417 - 3047330
Alignment:
Q  34 gagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcact 122  Q
    ||||| ||||||||| ||||||||||||||||||||  ||||| ||||| | |||||||||| ||||||||||||  ||||||| ||||    
T  3047417 gagtgtgggtgactt-aaaaatgggtagaaattaggtcttgttctttgtgagcttttaagttgatttcttgtaactcatttgtaccact 3047330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 28617172 - 28617330
Alignment:
Q  47 ttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcac--tcttattagtggatcaaagagtt 144  Q
    ||||||||| ||||||||||||| |||||| ||||| | |||||||| ||||||||||||||    |||||||||  || | |||||||||   |||| |    
T  28617172 ttgaaaaataggtagaaattaggttttgttctttgtgagcttttaagctaatttcttgtaaccccattgtatcactttcatcttagtggattggagagct 28617271  T
Q  145 g--ctttcaccaagagtaggtcattctaaactgaactgggtaaacaatattggtgtgtt 201  Q
    |  || || || ||||||||||||  |  || |||||||||||||||||||||||||||    
T  28617272 gctctctcccccagagtaggtcatattggaccgaactgggtaaacaatattggtgtgtt 28617330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 5817172 - 5817292
Alignment:
Q  1 ttcctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaattt 100  Q
    ||||||| |||||||| | ||||||||||  | ||||| | |||||||||||||||| ||||||||||| |||||| ||||| | || ||| |  |||||    
T  5817172 ttccttttgtgttttt-tcttaggattcattgagagtgtgagtgacttgaaaaatggatagaaattaggttttgttctttgtgagctcttatgcaaattt 5817270  T
Q  101 cttgtaacatatttgtatcact 122  Q
    ||||||||   |||||||||||    
T  5817271 cttgtaacccctttgtatcact 5817292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 761328 - 761255
Alignment:
Q  43 tgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgt 116  Q
    |||||||||||||||||||||||||| |||| || ||||| | ||||| || | |||| ||||||| |||||||    
T  761328 tgacttgaaaaatgggtagaaattagtgttttttctttgtgagcttttgagctcatttattgtaacctatttgt 761255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 38671376 - 38671304
Alignment:
Q  51 aaaatgggtagaaattagggtttgttatttgttatctt--ttaagttaatttcttgtaacatatttgtatcact 122  Q
    |||||||||||||||||||||| ||| ||||| | |||  ||||| |||||| |||||||| ||||||||||||    
T  38671376 aaaatgggtagaaattagggtt-gttctttgtgagcttgtttaagctaatttattgtaacacatttgtatcact 38671304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 9235495 - 9235591
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgtt-atttgttatcttttaagttaatttcttgtaac 108  Q
    |||||| |||||||||   | ||||| ||||||  ||||||||||||||||||||||  |||||  ||||| | ||| |||| ||||||||||||||    
T  9235495 ttttctcttaggattcgttgagagtgcgggtgatatgaaaaatgggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac 9235591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 20284273 - 20284177
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgtt-atttgttatcttttaagttaatttcttgtaac 108  Q
    |||||| ||||||||||  | ||||| ||||||  ||||||| ||||||||||||||  |||||  ||||| | ||| |||| ||||||||||||||    
T  20284273 ttttctcttaggattcattgagagtgtgggtgatatgaaaaaagggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac 20284177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 23402926 - 23403022
Alignment:
Q  13 ttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgtt-atttgttatcttttaagttaatttcttgtaac 108  Q
    |||||| ||||||||||  | ||||| | ||||  ||||||||||||||||||||||  |||||  ||||| | ||| |||| ||||||||||||||    
T  23402926 ttttctcttaggattcattgagagtgtgagtgatgtgaaaaatgggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac 23403022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 15937 - 16015
Alignment:
Q  49 gaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat 127  Q
    ||||||||||   |||||||| |||||| |||||    ||||||| |||||||||||||||| ||||||| ||||||||    
T  15937 gaaaaatgggggaaaattaggttttgttctttgtgggtttttaagctaatttcttgtaacatctttgtataactcttat 16015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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