View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_22 (Length: 532)

Name: NF1139_low_22
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_22
NF1139_low_22
[»] chr4 (6 HSPs)
chr4 (1-526)||(30768636-30769161)
chr4 (347-423)||(29195095-29195171)
chr4 (347-410)||(5795422-5795485)
chr4 (359-423)||(46295109-46295174)
chr4 (372-423)||(32992637-32992689)
chr4 (359-403)||(39030133-39030177)
[»] chr8 (5 HSPs)
chr8 (345-410)||(26688863-26688928)
chr8 (347-410)||(11793534-11793597)
chr8 (347-410)||(11979252-11979315)
chr8 (347-397)||(22268959-22269009)
chr8 (347-423)||(968362-968439)
[»] chr7 (9 HSPs)
chr7 (347-423)||(22760863-22760940)
chr7 (347-410)||(7801180-7801243)
chr7 (347-397)||(48125200-48125250)
chr7 (347-410)||(5273603-5273666)
chr7 (347-410)||(5579247-5579310)
chr7 (364-402)||(46279031-46279069)
chr7 (365-410)||(3968655-3968700)
chr7 (345-410)||(31835190-31835255)
chr7 (258-305)||(654705-654750)
[»] chr5 (5 HSPs)
chr5 (347-423)||(16773807-16773884)
chr5 (346-402)||(19373238-19373294)
chr5 (359-423)||(1410659-1410723)
chr5 (274-306)||(37397806-37397838)
chr5 (273-305)||(39229207-39229239)
[»] chr1 (8 HSPs)
chr1 (346-397)||(952510-952561)
chr1 (359-410)||(4824983-4825034)
chr1 (347-402)||(37046985-37047040)
chr1 (347-395)||(34228874-34228922)
chr1 (347-402)||(15581162-15581217)
chr1 (347-392)||(1690108-1690153)
chr1 (346-410)||(19940885-19940949)
chr1 (346-402)||(24857851-24857907)
[»] chr2 (4 HSPs)
chr2 (365-423)||(30359672-30359730)
chr2 (347-397)||(32106566-32106616)
chr2 (347-422)||(12994376-12994452)
chr2 (258-305)||(28669025-28669070)
[»] chr3 (6 HSPs)
chr3 (347-407)||(3054994-3055054)
chr3 (348-402)||(18316519-18316573)
chr3 (349-402)||(42799768-42799821)
chr3 (372-423)||(16900680-16900732)
chr3 (347-423)||(42430335-42430409)
chr3 (35-85)||(44573371-44573423)
[»] chr6 (2 HSPs)
chr6 (345-423)||(28028528-28028606)
chr6 (347-423)||(33549104-33549181)
[»] scaffold0258 (1 HSPs)
scaffold0258 (346-423)||(15322-15400)


Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 30768636 - 30769161
Alignment:
Q  1 tatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcaccctacaaccggttttgtaacgatgagttttaaaactaataaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30768636 tatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcaccctacaaccggttttgtaacgatgagttttaaaactaataaag 30768735  T
Q  101 tttaagtgttgttgttatgattcatgtgccctttgaaatcctacttctttttaggacaaaagttacgaattgttttaaaggtgttgactatgctactcat 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  30768736 tttaagtgttgttgttatgattcatgtgccctttgaagtcctacttctttttaggacaaaagttatgtatttttttaaaggtgttgactatgctactcat 30768835  T
Q  201 taattataataggtgtcgctctggctttaaatggatctctgctagtggataatggagttggtcccctcggatattagtcggtttttagatcggataccga 300  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||    
T  30768836 taattataataggtgtcgctctggctttaaatggatatctgctagtggataatggagttggtccccccggatattagtcgattttttggtcggataccga 30768935  T
Q  301 gtttttnnnnnnngttataatatgggacgtagattaatttgtgctcaacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttct 400  Q
    ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  30768936 gtttttaaaaaaagttataatatgggacgtagattaatttgtgctcaacccacttgaattggtcaggtggagttgacttgggaccttggagtgtacttct 30769035  T
Q  401 cttcaaggtcgcagttcgattctagggtttgtttgattttttctcacaggtttattttatactccaagtacttttatgcttaattttcttcttctaaggg 500  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30769036 catcaaggtcgcagttcgattctagggtttgtttgattttttctcacaggtttattttatactccaagtacttttatgcttaattttcttcttctaaggg 30769135  T
Q  501 tttgtttgattgttttctcacaggtt 526  Q
    ||||||||||||||||||||||||||    
T  30769136 tttgtttgattgttttctcacaggtt 30769161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 29195095 - 29195171
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgc-agttcgattct 423  Q
    ||||||||||  |||| ||||||| |||| ||||||||||||||||||||| ||| |||||||||| |||||||||||    
T  29195095 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctc-tcaaggtcgcaagttcgattct 29195171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 5795485 - 5795422
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 410  Q
    ||||||||||  |||||||||||| |||||||||| |||||||||| |||| ||| ||||||||    
T  5795485 aacccacttgggttggtctggtggtgttgacttggcaccttggagtatgctcctcctcaaggtc 5795422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 46295109 - 46295174
Alignment:
Q  359 ttggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 423  Q
    |||||||||| | |||| |||||||| |||||||||||| ||| |||||||| || ||||||||||    
T  46295109 ttggtctggtagtgttggcttgggacattggagtgtgctcctcctcaaggtctcaggttcgattct 46295174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 32992637 - 32992689
Alignment:
Q  372 gttgacttgggaccttggagtgtgcttctcttcaaggtcgc-agttcgattct 423  Q
    |||| ||||||||||||||||||||| ||| |||||||| | |||||||||||    
T  32992637 gttggcttgggaccttggagtgtgctcctcctcaaggtctcaagttcgattct 32992689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 39030177 - 39030133
Alignment:
Q  359 ttggtctggtggagttgacttgggaccttggagtgtgcttctctt 403  Q
    |||| ||||||| |||| ||||||||||||||||||||| |||||    
T  39030177 ttggcctggtggtgttggcttgggaccttggagtgtgctcctctt 39030133  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 26688863 - 26688928
Alignment:
Q  345 tcaacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 410  Q
    ||||||||||||  |||| ||||||| |||| ||||||||||||||||||||| ||| ||||||||    
T  26688863 tcaacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtc 26688928  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 11793597 - 11793534
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 410  Q
    ||||||||||  ||||||| |||| |||  ||||||||||||||||||||| ||| ||||||||    
T  11793597 aacccacttgggttggtcttgtggtgttcgcttgggaccttggagtgtgctcctcctcaaggtc 11793534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 410
Target Start/End: Original strand, 11979252 - 11979315
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 410  Q
    ||||||||||  ||||| ||| || ||||||||||||||||| |||||||||||  ||||||||    
T  11979252 aacccacttgggttggtttggcggtgttgacttgggaccttgaagtgtgcttcttctcaaggtc 11979315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 22269009 - 22268959
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 397  Q
    ||||||||||  |||| ||||||| |||| |||||||||||||||||||||    
T  22269009 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgct 22268959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 968362 - 968439
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 423  Q
    ||||||||||| |||| |||||||  ||| |||||||||| |||||||||| ||| || ||||| || ||||||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattct 968439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 22760863 - 22760940
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 423  Q
    ||||||||||  ||||||||||||  |||||||||||||| |||||||||| ||| |||||||| || ||||||||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattct 22760940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 410
Target Start/End: Original strand, 7801180 - 7801243
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 410  Q
    ||||||||||  |||| |||||||  |||||||||||||| |||||||||| ||||||||||||    
T  7801180 aacccacttggtttggcctggtggtattgacttgggacctgggagtgtgctcctcttcaaggtc 7801243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 48125250 - 48125200
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 397  Q
    ||||||||||  |||||||||||| |||| |||||||||||||||||||||    
T  48125250 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgct 48125200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 5273666 - 5273603
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 410  Q
    ||||||||||  |||| ||||||| |||| ||||||||||| ||||||||| ||| ||||||||    
T  5273666 aacccacttgggttggcctggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtc 5273603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 5579310 - 5579247
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 410  Q
    ||||||||||  |||  ||||||| |||| ||||||||||||||||||||| ||| ||||||||    
T  5579310 aacccacttgggttgacctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtc 5579247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 46279031 - 46279069
Alignment:
Q  364 ctggtggagttgacttgggaccttggagtgtgcttctct 402  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  46279031 ctggtggagttgactttggaccttggagtgtgctcctct 46279069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 410
Target Start/End: Complemental strand, 3968700 - 3968655
Alignment:
Q  365 tggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 410  Q
    |||||| |||||||||||||||| ||||||||| ||| ||||||||    
T  3968700 tggtggtgttgacttgggaccttcgagtgtgctcctcctcaaggtc 3968655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 31835190 - 31835255
Alignment:
Q  345 tcaacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 410  Q
    ||||||||||||  |||| ||||||| |||| ||||||  ||||||||||||| ||| ||||||||    
T  31835190 tcaacccacttgggttggcctggtggtgttggcttgggtgcttggagtgtgctcctcctcaaggtc 31835255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 654750 - 654705
Alignment:
Q  258 ttggtcccctcggatattagtcggtttttagatcggataccgagtttt 305  Q
    |||||||||||||||  ||||||||| || ||||||||||||||||||    
T  654750 ttggtcccctcggat--tagtcggttcttggatcggataccgagtttt 654705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 16773807 - 16773884
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 423  Q
    ||||||||||| ||||||||||||  |||||||||||||| |||||||||| ||| || ||||| || ||||||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattct 16773884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 19373238 - 19373294
Alignment:
Q  346 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 402  Q
    |||||||||||| |||| ||||||| |||| |||| |||||||||||||||| ||||    
T  19373238 caacccacttgagttggcctggtggtgttggcttgagaccttggagtgtgctactct 19373294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 1410723 - 1410659
Alignment:
Q  359 ttggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgcagttcgattct 423  Q
    ||||||||||||  |||||||||||  | |||||||||| ||| || ||||| ||||||||||||    
T  1410723 ttggtctggtggtattgacttgggatatgggagtgtgctcctcctcgaggtctcagttcgattct 1410659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 37397806 - 37397838
Alignment:
Q  274 ttagtcggtttttagatcggataccgagttttt 306  Q
    ||||||| |||||||||||||||||||||||||    
T  37397806 ttagtcgatttttagatcggataccgagttttt 37397838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 39229239 - 39229207
Alignment:
Q  273 attagtcggtttttagatcggataccgagtttt 305  Q
    |||||||||||||||||||||||| ||||||||    
T  39229239 attagtcggtttttagatcggatatcgagtttt 39229207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 397
Target Start/End: Original strand, 952510 - 952561
Alignment:
Q  346 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 397  Q
    |||||||||||| |||||||||||| |||| |||||||||| ||||||||||    
T  952510 caacccacttgagttggtctggtggtgttggcttgggacctgggagtgtgct 952561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 4824983 - 4825034
Alignment:
Q  359 ttggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 410  Q
    |||||||| ||| |||| ||||||||||||||||||||| ||||||||||||    
T  4824983 ttggtctgatggtgttggcttgggaccttggagtgtgctcctcttcaaggtc 4825034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 37046985 - 37047040
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 402  Q
    ||||||||||  |||||||||||| |||| ||||||||||||||||||||| ||||    
T  37046985 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgctcctct 37047040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 34228874 - 34228922
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtg 395  Q
    ||||||||||| |||||||||||| |||| |||||||||| ||||||||    
T  34228874 aacccacttgagttggtctggtggtgttggcttgggacctcggagtgtg 34228922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 402
Target Start/End: Complemental strand, 15581217 - 15581162
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 402  Q
    ||||||||||  |||| ||||||| |||| ||||||||||||||||||||| ||||    
T  15581217 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctct 15581162  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 1690153 - 1690108
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagt 392  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||||    
T  1690153 aacccacttgaattggtctggtggtattggcttgggacctgggagt 1690108  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 410
Target Start/End: Complemental strand, 19940949 - 19940885
Alignment:
Q  346 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 410  Q
    |||||||||||  |||||||||||| |||  |||||| |||||||||||||| ||| | ||||||    
T  19940949 caacccacttgggttggtctggtggtgttagcttgggtccttggagtgtgctcctccttaaggtc 19940885  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 402
Target Start/End: Complemental strand, 24857907 - 24857851
Alignment:
Q  346 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 402  Q
    |||||||||||  |||| ||||||| |||| || |||||||||||||| ||||||||    
T  24857907 caacccacttgggttggcctggtggtgttggctagggaccttggagtgggcttctct 24857851  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 423
Target Start/End: Original strand, 30359672 - 30359730
Alignment:
Q  365 tggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgcagttcgattct 423  Q
    |||||| |||| ||||||||||||||||||||| ||| |||||||| || |||||||||    
T  30359672 tggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcatttcgattct 30359730  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 32106566 - 32106616
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 397  Q
    ||||||||||  |||| ||||||| ||||||||||||||||||||||||||    
T  32106566 aacccacttgggttggcctggtggtgttgacttgggaccttggagtgtgct 32106616  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 12994452 - 12994376
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgc-agttcgattc 422  Q
    ||||| ||||| ||||||| ||||  |||||||||||||| |||||||||| ||| | |||||| | ||||||||||    
T  12994452 aacccgcttgagttggtctagtggtattgacttgggacctgggagtgtgctcctccttaaggtctcaagttcgattc 12994376  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 28669025 - 28669070
Alignment:
Q  258 ttggtcccctcggatattagtcggtttttagatcggataccgagtttt 305  Q
    |||||||||||||||  |||||| ||||| ||||||||||||||||||    
T  28669025 ttggtcccctcggat--tagtcgatttttggatcggataccgagtttt 28669070  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 3054994 - 3055054
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaag 407  Q
    ||||||||||  |||| ||||||| |||| ||||||||||||||| ||||||||| |||||    
T  3054994 aacccacttgggttggcctggtggtgttggcttgggaccttggagcgtgcttctcctcaag 3055054  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 402
Target Start/End: Complemental strand, 18316573 - 18316519
Alignment:
Q  348 acccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 402  Q
    |||||||||  |||||||||||| | || ||||||||||||||||||||| ||||    
T  18316573 acccacttgggttggtctggtggtgctggcttgggaccttggagtgtgctcctct 18316519  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 42799821 - 42799768
Alignment:
Q  349 cccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 402  Q
    ||||||||  |||| ||||||| |||| ||||||||||||||||||||| ||||    
T  42799821 cccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctct 42799768  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 16900732 - 16900680
Alignment:
Q  372 gttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 423  Q
    |||| ||||||||||||||||||||| ||| |||||||| || ||||||||||    
T  16900732 gttggcttgggaccttggagtgtgctcctcgtcaaggtctcatgttcgattct 16900680  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 42430335 - 42430409
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgcagttcgattct 423  Q
    ||||||||||  |||| |||||||  ||||||||||| ||||||||||||| ||| ||||||||  |||||||||||    
T  42430335 aacccacttgggttgg-ctggtggtattgacttgggatcttggagtgtgctcctc-tcaaggtcttagttcgattct 42430409  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 44573371 - 44573423
Alignment:
Q  35 ttataaagag-agtcactcctcaccctacaa-ccggttttgtaacgatgagtt 85  Q
    |||||||||| || ||||||||||||||||| |||||||||||| ||||||||    
T  44573371 ttataaagaggaggcactcctcaccctacaagccggttttgtaaggatgagtt 44573423  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 423
Target Start/End: Original strand, 28028528 - 28028606
Alignment:
Q  345 tcaacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 423  Q
    ||||||||||||  |||| ||||||| |||||||||||||||| ||||| ||| ||| |||||||| || ||||||||||    
T  28028528 tcaacccacttgggttggcctggtggtgttgacttgggacctttgagtgagctcctc-tcaaggtctcatgttcgattct 28028606  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 33549104 - 33549181
Alignment:
Q  347 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 423  Q
    ||||||||||  ||||||||||||  ||| |||||||||| |||||||||| ||| || ||||| || ||||||||||    
T  33549104 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattct 33549181  T

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Target: scaffold0258 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 423
Target Start/End: Complemental strand, 15400 - 15322
Alignment:
Q  346 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 423  Q
    |||||||||||  ||||||||||||  ||| |||||||||| |||||||||| ||| || ||||| || ||||||||||    
T  15400 caacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattct 15322  T

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