View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_23 (Length: 532)

Name: NF1139_low_23
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_23
NF1139_low_23
[»] chr3 (1 HSPs)
chr3 (63-421)||(42107348-42107706)
[»] chr2 (2 HSPs)
chr2 (227-421)||(38051068-38051267)
chr2 (223-290)||(38022420-38022487)
[»] chr8 (3 HSPs)
chr8 (223-290)||(27325683-27325750)
chr8 (224-264)||(15820730-15820770)
chr8 (221-273)||(42024660-42024712)
[»] chr5 (2 HSPs)
chr5 (220-280)||(8962280-8962340)
chr5 (223-263)||(30700150-30700190)
[»] chr6 (1 HSPs)
chr6 (220-289)||(3639745-3639814)
[»] chr1 (1 HSPs)
chr1 (223-264)||(16305493-16305534)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 63 - 421
Target Start/End: Original strand, 42107348 - 42107706
Alignment:
Q  63 tttgtgcactcctcatcttatcatacaatgcagcacattatctgacctcctgcaccatctcaataaacattgatacggcagcaagtgcacgagtatatcg 162  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  42107348 tttgtgcactcctcatcttatcatacaatgcagcacattattcgacctcctgcaccatctcaatagacattgatacggcagcaagtgcacgagtatatca 42107447  T
Q  163 tcgtaataaaaaagtattaatcctcatgaatttgtgattatcaatgtaccttttcgcctaaggctatgtttggatattttaaaacgaacggaatggagcg 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42107448 tcgtaataaaaaagtattaatcctcatgaatttgtgattatcaatgtaccttttcgcctaaggctatgtttgaatattttaaaacgaacggaatggagcg 42107547  T
Q  263 gaacgtaatgggatggagtgggatggaacagaatggaatgaaatagagtttccatcccactatttgggtattctatggcagagcggaacaaactctccat 362  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42107548 gaacgtaataggatggagtgggatggaacggaacggaatgaaatagagtttccatcccactatttgagtattctatggcagagcggaacaaactctccat 42107647  T
Q  363 tccgttgtttgaaaacggacggaatggtatacattataatttttaattccatttttacc 421  Q
    ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42107648 tccattgtttgaaaatggacggaatggtatacattataatttttaattccatttttacc 42107706  T

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Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 227 - 421
Target Start/End: Original strand, 38051068 - 38051267
Alignment:
Q  227 tatgtttggatattttaaaacgaacggaatggagcggaacgtaatgggatggagtgggatggaacagaatggaatgaaatagagtttccatcccactatt 326  Q
    |||||||||||||||||||||||||| ||| || ||||||| ||| | ||||||||||||||| | ||| ||||| ||||||||||||||| ||||| ||    
T  38051068 tatgtttggatattttaaaacgaacgaaatagatcggaacgaaatagaatggagtgggatggagcggaacggaataaaatagagtttccattccactgtt 38051167  T
Q  327 tgggtattctatgg-----cagagcggaacaaactctccattccgttgttt-gaaaacggacggaatggtatacattataatttttaattccatttttac 420  Q
    || |||||||| ||       ||  ||||||||||||| ||||| |||||| ||||||||||  ||||  ||| |||||| ||||| |||||||||||||    
T  38051168 tgagtattctacggaggaagggaagggaacaaactctctattccattgtttggaaaacggacaaaatgaaataaattatacttttt-attccatttttac 38051266  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 38022420 - 38022487
Alignment:
Q  223 aggctatgtttggatattttaaaacgaacggaatggagcggaacgtaatgggatggagtgggatggaa 290  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||| | |||||| |||||||||    
T  38022420 aggctatgtttggatattttaaaacgaatggaatggagcggagcggaatagaatggagcgggatggaa 38022487  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 27325750 - 27325683
Alignment:
Q  223 aggctatgtttggatattttaaaacgaacggaatggagcggaacgtaatgggatggagtgggatggaa 290  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||| |||||||||    
T  27325750 aggctatgtttggatattttaaaacgaatggaatggagcggagcggaatggaatggagcgggatggaa 27325683  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 15820770 - 15820730
Alignment:
Q  224 ggctatgtttggatattttaaaacgaacggaatggagcgga 264  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  15820770 ggctatgtttgaatattttaaaacgaacggaatggaacgga 15820730  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 42024660 - 42024712
Alignment:
Q  221 taaggctatgtttggatattttaaaacgaacggaatggagcggaacgtaatgg 273  Q
    ||||||| ||||||||||  ||||||| ||||||| ||||||||||| |||||    
T  42024660 taaggctctgtttggataagttaaaaccaacggaacggagcggaacggaatgg 42024712  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 8962340 - 8962280
Alignment:
Q  220 ctaaggctatgtttggatattttaaaacgaacggaatggagcggaacgtaatgggatggag 280  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||    
T  8962340 ctaaggctatgtttggatattttaaaacgaatggaatggagcggagcggaatggaatggag 8962280  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 30700190 - 30700150
Alignment:
Q  223 aggctatgtttggatattttaaaacgaacggaatggagcgg 263  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  30700190 aggctatgtttggatattttaaaacgaatggaatggagcgg 30700150  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 3639814 - 3639745
Alignment:
Q  220 ctaaggctatgtttggatattttaaaacgaacggaatggagcggaacgtaatgggatggagtgggatgga 289  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | | ||||| | |||| ||||||||    
T  3639814 ctaaggctatgtttggatattttaaaacgaatggaatggagcgggatggaatggaacggagcgggatgga 3639745  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 16305493 - 16305534
Alignment:
Q  223 aggctatgtttggatattttaaaacgaacggaatggagcgga 264  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  16305493 aggctatgtttggatattttaaaacgaacggaatggaacgga 16305534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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