View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_231 (Length: 235)

Name: NF1139_low_231
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_231
NF1139_low_231
[»] chr1 (16 HSPs)
chr1 (19-235)||(9355417-9355633)
chr1 (151-235)||(16313906-16313990)
chr1 (152-235)||(7015009-7015092)
chr1 (151-234)||(12068004-12068087)
chr1 (152-234)||(49000804-49000886)
chr1 (152-235)||(1181518-1181601)
chr1 (165-235)||(43514356-43514426)
chr1 (166-234)||(44490700-44490768)
chr1 (152-235)||(23943628-23943711)
chr1 (155-221)||(25901345-25901411)
chr1 (152-184)||(16315395-16315427)
chr1 (152-220)||(48569400-48569468)
chr1 (152-185)||(10308367-10308400)
chr1 (152-185)||(39222596-39222629)
chr1 (152-185)||(46923671-46923704)
chr1 (153-185)||(30308273-30308305)
[»] chr4 (21 HSPs)
chr4 (152-235)||(54185631-54185714)
chr4 (152-235)||(22923342-22923425)
chr4 (152-235)||(22927995-22928078)
chr4 (152-235)||(22984274-22984357)
chr4 (152-235)||(22997862-22997945)
chr4 (152-234)||(1939390-1939472)
chr4 (152-235)||(45864975-45865058)
chr4 (152-235)||(50333986-50334069)
chr4 (152-223)||(12657229-12657302)
chr4 (159-235)||(32304853-32304929)
chr4 (160-235)||(18487119-18487194)
chr4 (152-211)||(43210231-43210290)
chr4 (152-235)||(49285499-49285582)
chr4 (152-220)||(31825854-31825922)
chr4 (152-231)||(49063146-49063225)
chr4 (201-235)||(16936153-16936187)
chr4 (152-218)||(21713292-21713358)
chr4 (152-211)||(50336433-50336494)
chr4 (152-185)||(12656354-12656387)
chr4 (152-185)||(54703531-54703564)
chr4 (151-235)||(156042-156126)
[»] chr7 (4 HSPs)
chr7 (152-235)||(432955-433038)
chr7 (152-235)||(44226544-44226627)
chr7 (152-235)||(23943750-23943833)
chr7 (152-184)||(4035313-4035345)
[»] chr2 (7 HSPs)
chr2 (152-235)||(5848114-5848197)
chr2 (152-234)||(19380244-19380326)
chr2 (153-235)||(11816104-11816186)
chr2 (151-224)||(38807248-38807321)
chr2 (152-211)||(42242086-42242145)
chr2 (152-185)||(34620042-34620075)
chr2 (152-185)||(43837513-43837546)
[»] chr5 (10 HSPs)
chr5 (152-235)||(29195204-29195287)
chr5 (152-235)||(35048695-35048778)
chr5 (152-235)||(12143815-12143898)
chr5 (152-234)||(2743878-2743960)
chr5 (152-235)||(20882906-20882989)
chr5 (154-234)||(13275053-13275133)
chr5 (152-211)||(20887908-20887967)
chr5 (201-235)||(26092522-26092556)
chr5 (152-182)||(29196097-29196127)
chr5 (152-185)||(35050516-35050549)
[»] chr3 (4 HSPs)
chr3 (152-235)||(46182943-46183026)
chr3 (151-235)||(46637081-46637165)
chr3 (165-234)||(34436997-34437066)
chr3 (201-235)||(52562663-52562697)
[»] chr8 (6 HSPs)
chr8 (152-235)||(5076283-5076366)
chr8 (160-235)||(4412611-4412686)
chr8 (152-225)||(37226993-37227066)
chr8 (152-185)||(15743349-15743382)
chr8 (152-221)||(43692349-43692418)
chr8 (152-185)||(43693725-43693758)
[»] chr6 (4 HSPs)
chr6 (152-235)||(1031806-1031889)
chr6 (167-235)||(7527089-7527157)
chr6 (152-235)||(35018763-35018846)
chr6 (152-185)||(11598913-11598946)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 9355633 - 9355417
Alignment:
Q  19 ctttgccttgaaccaccaactttcttaacgaatatgtatgggtaaatatatccctttaaataggcattttggcactatgtttgcatcgggttactggatt 118  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9355633 ctttgccttgaaccaccaactttcttaaagaatatgtatgggtaaatatatccctttaaataggcattttggcactatgtttgcattgggttactggatt 9355534  T
Q  119 tttacccttttcctgagtaggaaaaacaagtgatgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaa 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| ||| |||||||||||||||||||    
T  9355533 tttaccctttccctgagtaggaaaaacaagtgatgctctccaccctgcacattttgctcgcgccctgcgcctgttttaagtttacccttgcgctagttaa 9355434  T
Q  219 ctaacgtaagtgtaaaa 235  Q
    |||||| ||||||||||    
T  9355433 ctaacgcaagtgtaaaa 9355417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 16313906 - 16313990
Alignment:
Q  151 atgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    ||||||||||||| |||||||||||||||| | ||  ||||||||||  ||||||||||||||||||||||||| ||||| ||||    
T  16313906 atgctctccacccagcacattttgctcgcgtcatgcagccgtttcaaatttacccttgcgctagttaactaacgcaagtgaaaaa 16313990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 7015092 - 7015009
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| |||||||||||||||||||||  ||||||  ||  ||||||||||||||||||||||||| ||||| ||||    
T  7015092 tgctctccacccagcacattttgctcgcgccctgcagccgttcgaaatttacccttgcgctagttaactaacgcaagtgaaaaa 7015009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 12068087 - 12068004
Alignment:
Q  151 atgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaa 234  Q
    ||||||||||||| |||||||||||||||||||||  |||||| |||  ||| ||||||| ||||||||||||| |||||||||    
T  12068087 atgctctccacccagcacattttgctcgcgccctgcagccgttccaaatttatccttgcgttagttaactaacgaaagtgtaaa 12068004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 49000886 - 49000804
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaa 234  Q
    |||||| ||||| |||||||||||||||||||||| ||||||  ||  |||||||||| |||||||||| ||| |||||||||    
T  49000886 tgctcttcacccagcacattttgctcgcgccctgtagccgttctaaatttacccttgcactagttaactcacgcaagtgtaaa 49000804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 1181601 - 1181518
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| |||||||||||||||| |||   | | ||||||  ||||||||||||||||||||||||| ||||| ||||    
T  1181601 tgctctccacccagcacattttgctcgcgtcctacagtcttttcaaatttacccttgcgctagttaactaacgcaagtgaaaaa 1181518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 43514356 - 43514426
Alignment:
Q  165 gcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||||||| ||||  ||||||| ||  ||||||||||| ||||||||||||| ||||||||||    
T  43514356 gcacattttgctcgcgtcctgcagccgttttaaatttacccttgcgttagttaactaacgcaagtgtaaaa 43514426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 44490768 - 44490700
Alignment:
Q  166 cacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaa 234  Q
    ||||||||||||||||||||  |||||| |||  |||||||||| |||||||||| ||| |||||||||    
T  44490768 cacattttgctcgcgccctgcagccgttccaaatttacccttgcactagttaactcacgcaagtgtaaa 44490700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 23943711 - 23943628
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||| |||||||||||||||||| ||||||||   ||||| |||   |||||||||| | |||||||||||||| |||||||    
T  23943711 tgctcttcaccctgcacattttgcttgcgccctgcaaccgttccaaatatacccttgcgtttgttaactaacgtaactgtaaaa 23943628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 25901345 - 25901411
Alignment:
Q  155 tctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaacta 221  Q
    ||||||||| |||||||||||||||||||| | |||||  |||  ||||||||||| ||||||||||    
T  25901345 tctccacccagcacattttgctcgcgccctatagccgtaccaaatttacccttgcgttagttaacta 25901411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 16315427 - 16315395
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccct 184  Q
    |||||||||||||||||||||||||||||||||    
T  16315427 tgctctccaccctgcacattttgctcgcgccct 16315395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 48569468 - 48569400
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaact 220  Q
    |||||| |||||||||||||||||||||||||||  ||| |  ||| | | ||||||||||||||||||    
T  48569468 tgctcttcaccctgcacattttgctcgcgccctgctgccatgccaaaaatgcccttgcgctagttaact 48569400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 10308367 - 10308400
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctg 185  Q
    |||||| |||||||||||||||||||||||||||    
T  10308367 tgctcttcaccctgcacattttgctcgcgccctg 10308400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 39222596 - 39222629
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctg 185  Q
    |||||| |||||||||||||||||||||||||||    
T  39222596 tgctcttcaccctgcacattttgctcgcgccctg 39222629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 46923671 - 46923704
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctg 185  Q
    |||||| |||||||||||||||||||||||||||    
T  46923671 tgctcttcaccctgcacattttgctcgcgccctg 46923704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 30308273 - 30308305
Alignment:
Q  153 gctctccaccctgcacattttgctcgcgccctg 185  Q
    ||||| |||||||||||||||||||||||||||    
T  30308273 gctcttcaccctgcacattttgctcgcgccctg 30308305  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 54185714 - 54185631
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  54185714 tgctctccaccctgcatattttgctcgcgccctgcagccgtttcaaatttacccttgcgctagttaactaacgcaagtgtaaaa 54185631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 22923425 - 22923342
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| |||||||||||||||||| ||  |||||| |||  ||||||||||||||||||||||||| ||||| ||||    
T  22923425 tgctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaa 22923342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 22928078 - 22927995
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| |||||||||||||||||| ||  |||||| |||  ||||||||||||||||||||||||| ||||| ||||    
T  22928078 tgctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaa 22927995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 22984357 - 22984274
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| |||||||||||||||||| ||  |||||| |||  ||||||||||||||||||||||||| ||||| ||||    
T  22984357 tgctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaa 22984274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 22997945 - 22997862
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| |||||||||||||||||| ||  |||||| |||  ||||||||||||||||||||||||| ||||| ||||    
T  22997945 tgctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaa 22997862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 1939472 - 1939390
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaa 234  Q
    ||||||| |||| |||||||||||||||||||||  |||||| |||  ||| |||| |||||||||||||||| |||||||||    
T  1939472 tgctctctacccagcacattttgctcgcgccctgcagccgttccaaatttatccttacgctagttaactaacgcaagtgtaaa 1939390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 45865058 - 45864975
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||| |||||||||||||||||||||||||||||   |||||  ||  |||| |||||||||||||||||| | ||||||||||    
T  45865058 tgctatccaccctgcacattttgctcgcgccctgcaaccgttctaaatttactcttgcgctagttaactaatgcaagtgtaaaa 45864975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 50333986 - 50334069
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| ||||||||||||||| ||||    ||||| |||  ||||||||||||||||||||||||| ||||| ||||    
T  50333986 tgctctccacccggcacattttgctcgcaccctacaaccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaa 50334069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 12657302 - 12657229
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgc--cctgtggccgtttcaagattacccttgcgctagttaactaac 223  Q
    |||||||||||| |||||||||||||||||  ||||  |||||| |||  ||||||||||||||||||||||||    
T  12657302 tgctctccacccagcacattttgctcgcgcgccctgcagccgttccaaatttacccttgcgctagttaactaac 12657229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 32304853 - 32304929
Alignment:
Q  159 caccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||||||||||||| | ||  ||||||  ||  ||||||||||||||||||||| ||| ||||||||||    
T  32304853 caccctgcacattttgctcgcgtcttgcagccgttctaaatttacccttgcgctagttaactcacgcaagtgtaaaa 32304929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 18487194 - 18487119
Alignment:
Q  160 accctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||||||||| | |||||| ||| || |||   |||||||||| ||||||||||||| ||||||||||    
T  18487194 accctgcacattttgctcacaccctgtagcccttccaaatatacccttgcgttagttaactaacgcaagtgtaaaa 18487119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 43210290 - 43210231
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgc 211  Q
    |||||||||| ||||| |||||||||||||||||  ||||||||||  ||||||||||||    
T  43210290 tgctctccacactgcatattttgctcgcgccctgcagccgtttcaaatttacccttgcgc 43210231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 49285499 - 49285582
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||| |||||||||||||||||||||||| | ||| ||||||| ||  ||||||||||  || |||||||| | ||||||||||    
T  49285499 tgctttccaccctgcacattttgctcgcggcttgtagccgttttaaatttacccttgcattaattaactaatgcaagtgtaaaa 49285582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 31825922 - 31825854
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaact 220  Q
    |||||| |||||||||||||||||||||||||||  ||| |  ||| | | ||||||||||||||||||    
T  31825922 tgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaact 31825854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 49063146 - 49063225
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgt 231  Q
    |||||| || |||||||||||||||||| |||||  |||||  ||| | ||||||||||| ||||||||| || ||||||    
T  49063146 tgctcttcaacctgcacattttgctcgcaccctgcagccgtgccaaaaatacccttgcgcaagttaactagcgcaagtgt 49063225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 16936187 - 16936153
Alignment:
Q  201 tacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||||||||||||||| ||||||||||    
T  16936187 tacccttgcgctagttaactaacgcaagtgtaaaa 16936153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 21713358 - 21713292
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaa 218  Q
    |||||| |||||||||||||||||||||||||||  ||| |  ||| | | ||||||||||||||||    
T  21713358 tgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaa 21713292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 50336494 - 50336433
Alignment:
Q  152 tgctctccaccct--gcacattttgctcgcgccctgtggccgtttcaagattacccttgcgc 211  Q
    |||||||||||||  |||||||||||||||||||||  |||||| |||  ||||||||||||    
T  50336494 tgctctccaccctctgcacattttgctcgcgccctgcagccgttccaaatttacccttgcgc 50336433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 12656354 - 12656387
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctg 185  Q
    |||||||||||||||||||||||||||| |||||    
T  12656354 tgctctccaccctgcacattttgctcgcaccctg 12656387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 54703531 - 54703564
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctg 185  Q
    |||||| |||||||||||||||||||||||||||    
T  54703531 tgctcttcaccctgcacattttgctcgcgccctg 54703564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 156042 - 156126
Alignment:
Q  151 atgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    ||||||| ||||||  |||||||||||||||||||  ||| || |||   || |||| || ||||||||||||| ||||||||||    
T  156042 atgctcttcaccctatacattttgctcgcgccctgcagccattccaaatatatccttacgttagttaactaacgcaagtgtaaaa 156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 433038 - 432955
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||||||||||||||||||| ||| |  ||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  433038 tgctctccaccctgcacattttgctcgcacccggcagccgtttcaaatttacccttgcgctagttaactaacgcaagtgtaaaa 432955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 44226627 - 44226544
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| |||||||||| ||| ||||||| ||||||||||  |||||||||| ||||||||| |||| ||||| ||||    
T  44226627 tgctctccacccagcacattttgttcgtgccctgtagccgtttcaaatttacccttgctctagttaaccaacgcaagtgaaaaa 44226544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 23943833 - 23943750
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||| ||||||||||||||||||||||| |||  ||||||  ||   |||||||||| ||||||||||||| | ||||||||    
T  23943833 tgctcttcaccctgcacattttgctcgcgctctgcagccgttctaaatatacccttgcgttagttaactaacgcaggtgtaaaa 23943750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 4035345 - 4035313
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccct 184  Q
    |||||| ||||||||||||||||||||||||||    
T  4035345 tgctcttcaccctgcacattttgctcgcgccct 4035313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 5848197 - 5848114
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||| ||||||||||||||||||||||||||| |  ||| || |||  ||||||||||||||||||||||||||||||||||||    
T  5848197 tgctatccaccctgcacattttgctcgcgcccagcagccattccaaatttacccttgcgctagttaactaacgtaagtgtaaaa 5848114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 19380326 - 19380244
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaa 234  Q
    |||||||||||| |||||||||||||||||||||  |||||| |||  |||| |||||||||||||||||||| |||||||||    
T  19380326 tgctctccacccagcacattttgctcgcgccctgcagccgttccaaatttactcttgcgctagttaactaacgcaagtgtaaa 19380244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 11816186 - 11816104
Alignment:
Q  153 gctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    ||||| |||||  |||||||||||||  |||||  ||||||||||  ||||||||||||||||||||| ||| ||||||||||    
T  11816186 gctcttcacccatcacattttgctcgtaccctgcagccgtttcaaatttacccttgcgctagttaactcacgcaagtgtaaaa 11816104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 38807321 - 38807248
Alignment:
Q  151 atgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacg 224  Q
    ||||||||||||||||||||||| ||| ||||||   |||||| |||  |||||||||| |||||||| |||||    
T  38807321 atgctctccaccctgcacattttactcacgccctacagccgttccaaatttacccttgcactagttaaataacg 38807248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 42242145 - 42242086
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgc 211  Q
    |||||| |||||||||||||||||||||||||||  |||||  ||| | |||||||||||    
T  42242145 tgctcttcaccctgcacattttgctcgcgccctgcagccgtgccaaaaatacccttgcgc 42242086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 34620075 - 34620042
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctg 185  Q
    |||||| |||||||||||||||||||||||||||    
T  34620075 tgctcttcaccctgcacattttgctcgcgccctg 34620042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 43837513 - 43837546
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctg 185  Q
    |||||| |||||||||||||||||||||||||||    
T  43837513 tgctcttcaccctgcacattttgctcgcgccctg 43837546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 29195204 - 29195287
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| ||| ||||||||||| ||||| ||||||| |||  ||||||||||||||||||||||||| ||||| ||||    
T  29195204 tgctctccacccagcatattttgctcgctccctgcggccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaa 29195287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 35048695 - 35048778
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| ||||||||||||||| |||||  ||||||||||  ||||||||||| ||||||| ||||| ||||| ||||    
T  35048695 tgctctccacccagcacattttgctcgctccctgcagccgtttcaaatttacccttgcgttagttaattaacgcaagtgaaaaa 35048778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 12143815 - 12143898
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||  |||||||||||||||||||||  ||||||  ||  ||||| ||||||||||||||||||| ||||| ||||    
T  12143815 tgctctccacctagcacattttgctcgcgccctgcagccgttctaaatttacctttgcgctagttaactaacgcaagtgaaaaa 12143898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 2743960 - 2743878
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaa 234  Q
    |||||| ||||| |||||||||||||| ||| ||  |||||| |||  ||| ||||||||||||||||| |||||||||||||    
T  2743960 tgctcttcacccagcacattttgctcgtgccttgcagccgttccaaatttatccttgcgctagttaactcacgtaagtgtaaa 2743878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 20882906 - 20882989
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| ||  ||||||||| |||| ||  |||||| |||  ||||||||||||||||||||||||| ||||| ||||    
T  20882906 tgctctccacccagcgtattttgctcacgccatgcagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaa 20882989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 13275133 - 13275053
Alignment:
Q  154 ctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaa 234  Q
    |||| ||||| |||||||||||||||||||||   |||||  ||  ||||| ||||||||||||||| ||| |||||||||    
T  13275133 ctcttcaccccgcacattttgctcgcgccctgcaaccgttcaaaatttaccattgcgctagttaactcacgcaagtgtaaa 13275053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 20887967 - 20887908
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgc 211  Q
    |||||||||||||||||||||||||||||| |||  ||||||  ||  ||||||||||||    
T  20887967 tgctctccaccctgcacattttgctcgcgctctgcagccgttcgaaatttacccttgcgc 20887908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 26092522 - 26092556
Alignment:
Q  201 tacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||||||||||||||| ||||||||||    
T  26092522 tacccttgcgctagttaactaacgcaagtgtaaaa 26092556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 182
Target Start/End: Complemental strand, 29196127 - 29196097
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgcc 182  Q
    |||||||||||||||||||||||||||||||    
T  29196127 tgctctccaccctgcacattttgctcgcgcc 29196097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 35050549 - 35050516
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctg 185  Q
    ||||||||||||||||||||||| ||||||||||    
T  35050549 tgctctccaccctgcacattttgttcgcgccctg 35050516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 46182943 - 46183026
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    ||||||||||| |||||||||||||| | |||||  ||||||||||  ||||||||||||||||||| ||||| ||||||||||    
T  46182943 tgctctccaccttgcacattttgctcacaccctgcagccgtttcaaatttacccttgcgctagttaaataacgcaagtgtaaaa 46183026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 46637165 - 46637081
Alignment:
Q  151 atgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||| ||||||||||||||||||||| ||  |||||| |||  ||| |||| |||||||||||||||| || |||||||    
T  46637165 atgctctccatcctgcacattttgctcgcgccatgcagccgttccaaatttatccttacgctagttaactaacgcaaatgtaaaa 46637081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 34436997 - 34437066
Alignment:
Q  165 gcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaa 234  Q
    |||||||||||||||| ||||  |||||| |||  |||||||| |||||||||||| ||| |||||||||    
T  34436997 gcacattttgctcgcgtcctgcagccgttccaaatttacccttacgctagttaactcacgcaagtgtaaa 34437066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 52562663 - 52562697
Alignment:
Q  201 tacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    ||||| |||||||||||||||||||||||||||||    
T  52562663 tacccctgcgctagttaactaacgtaagtgtaaaa 52562697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 5076366 - 5076283
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    ||||||||||||||||||| ||||||||||| ||  ||||||||||  ||||| ||||| ||||||||||||| || |||||||    
T  5076366 tgctctccaccctgcacatgttgctcgcgccttgcagccgtttcaaatttaccattgcgttagttaactaacgcaaatgtaaaa 5076283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 4412611 - 4412686
Alignment:
Q  160 accctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||| |||||||||||||||||||||  |||||| |||  ||||| |||||||| |||||| ||| ||||||||||    
T  4412611 acccagcacattttgctcgcgccctgcagccgttccaaatttacctttgcgctaattaactcacgcaagtgtaaaa 4412686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 37226993 - 37227066
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgt 225  Q
    |||||| ||||| |||||||||||||||||||||  ||| || |||  ||||| ||| ||||||||||||||||    
T  37226993 tgctcttcacccagcacattttgctcgcgccctgcagccattccaaatttacctttgtgctagttaactaacgt 37227066  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 15743382 - 15743349
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctg 185  Q
    |||||| |||||||||||||||||||||||||||    
T  15743382 tgctcttcaccctgcacattttgctcgcgccctg 15743349  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 43692349 - 43692418
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaacta 221  Q
    |||||| |||||||||| ||||| ||||||||||  ||| | |||| | | |||||||||||||||||||    
T  43692349 tgctcttcaccctgcacgttttgttcgcgccctgcagccatgtcaaaaatgcccttgcgctagttaacta 43692418  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 43693758 - 43693725
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctg 185  Q
    |||||| |||||||||||||||||||||||||||    
T  43693758 tgctcttcaccctgcacattttgctcgcgccctg 43693725  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 1031889 - 1031806
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||| ||||||||||||||| || |   |||||| |||  ||||||||||||||||||||||||| ||||| ||||    
T  1031889 tgctctccacccagcacattttgctcgcaccgtccagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaa 1031806  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 7527157 - 7527089
Alignment:
Q  167 acattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||||||||||||||||  ||||||  ||  ||||||||||||||||||||| ||| ||||||||||    
T  7527157 acattttgctcgcgccctgcagccgttctaaatttacccttgcgctagttaactcacgcaagtgtaaaa 7527089  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 35018846 - 35018763
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctgtggccgtttcaagattacccttgcgctagttaactaacgtaagtgtaaaa 235  Q
    |||||| |||||  ||||||||||||||| ||||  |||||| |||  ||||||| || |||||||||| ||| ||||||||||    
T  35018846 tgctcttcacccaacacattttgctcgcgtcctgcagccgttccaaatttaccctcgcactagttaactcacgcaagtgtaaaa 35018763  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 11598913 - 11598946
Alignment:
Q  152 tgctctccaccctgcacattttgctcgcgccctg 185  Q
    |||||| |||||||||||||||||||||||||||    
T  11598913 tgctcttcaccctgcacattttgctcgcgccctg 11598946  T

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