View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_232 (Length: 235)
Name: NF1139_low_232
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_232 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 275846 - 275704
Alignment:
| Q |
1 |
cctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275846 |
cctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccg |
275747 |
T |
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| Q |
101 |
atccttaaaaaatagccaagaaaatagcaggaagagcactttg |
143 |
Q |
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| T |
275746 |
atccttaaaaaatagccaagaaaatagcaggaagagcactttg |
275704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 26396451 - 26396309
Alignment:
| Q |
1 |
cctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396451 |
cctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccg |
26396352 |
T |
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| Q |
101 |
atccttaaaaaatagccaagaaaatagcaggaagagcactttg |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396351 |
atccttaaaaaatagccaagaaaatagcaggaagagcactttg |
26396309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 28736 - 28594
Alignment:
| Q |
1 |
cctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccg |
100 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28736 |
cctctcaattgttggaggaaggatcattaaccaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccg |
28637 |
T |
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| Q |
101 |
atccttaaaaaatagccaagaaaatagcaggaagagcactttg |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28636 |
atccttaaaaaatagccaagaaaatagcaggaagagcactttg |
28594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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