View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_236 (Length: 232)
Name: NF1139_low_236
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_236 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1580944 - 1580723
Alignment:
| Q |
1 |
aagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
1580944 |
aagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgaca |
1580845 |
T |
|
| Q |
101 |
tcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1580844 |
tcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttttcgcct |
1580745 |
T |
|
| Q |
201 |
tatcagccatgctaccttcatc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
1580744 |
tatcagccatgctaccttcatc |
1580723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1603871 - 1604092
Alignment:
| Q |
1 |
aagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
1603871 |
aagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgaca |
1603970 |
T |
|
| Q |
101 |
tcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgcct |
200 |
Q |
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| T |
1603971 |
tcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttttcgcct |
1604070 |
T |
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| Q |
201 |
tatcagccatgctaccttcatc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
1604071 |
tatcagccatgctaccttcatc |
1604092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 1587425 - 1587251
Alignment:
| Q |
20 |
ctgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcg |
119 |
Q |
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||||||||||| || |||||| ||||||||||||| |||||||||| | ||||| ||||||||||||||| |||| || | ||||||||||||||| | |
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| T |
1587425 |
ctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtg |
1587326 |
T |
|
| Q |
120 |
gaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttt |
194 |
Q |
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| T |
1587325 |
gaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggtttaactcttcttt |
1587251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 1590822 - 1590972
Alignment:
| Q |
44 |
ttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttat |
143 |
Q |
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||||||||||||| |||||||||| | ||||| ||||||||||||||| |||| || | ||||||||||||||| |||||||||||||| |||||||||| |
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| T |
1590822 |
ttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttat |
1590921 |
T |
|
| Q |
144 |
cttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttt |
194 |
Q |
| |
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| || ||| |||||||||||| |||||||||| || ||||||| |
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| T |
1590922 |
catgtttttttggtttgatcttcttcgtggtctttggtttaacacttcttt |
1590972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 19270394 - 19270555
Alignment:
| Q |
33 |
caaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaa |
132 |
Q |
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||||||||| |||| |||||||| |||||||||| | ||||||||||||||||||||| |||| | | ||||||||||||||| ||||| |||||||| |
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| T |
19270394 |
caaacaattttttacccatgatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggtggaggagatgacaa |
19270493 |
T |
|
| Q |
133 |
tttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttt |
194 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
19270494 |
attttccttatcttgtttttttggtttcatcttcttcgtgctctttggtttcactcttcttt |
19270555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 39616064 - 39616178
Alignment:
| Q |
33 |
caaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaa |
132 |
Q |
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||||||||| ||| ||||||||| | |||||||| | ||||||||||| ||||||||| ||| ||||| |||||| ||||||||||||||| | | ||| |
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| T |
39616064 |
caaacaatttctttgacatgatatatctgatatcagtgccattcaactccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaa |
39616163 |
T |
|
| Q |
133 |
tttttccttatcttg |
147 |
Q |
| |
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|||| ||||||||| |
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| T |
39616164 |
atttttcttatcttg |
39616178 |
T |
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