View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_237 (Length: 228)

Name: NF1139_low_237
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_237
NF1139_low_237
[»] chr1 (3 HSPs)
chr1 (7-228)||(10997159-10997380)
chr1 (171-220)||(8281526-8281575)
chr1 (57-192)||(25116429-25116562)
[»] chr8 (3 HSPs)
chr8 (162-228)||(31513164-31513230)
chr8 (50-102)||(7597429-7597481)
chr8 (165-197)||(18141758-18141790)
[»] chr3 (1 HSPs)
chr3 (100-186)||(29100405-29100487)
[»] chr6 (1 HSPs)
chr6 (89-189)||(30517887-30517983)
[»] chr5 (1 HSPs)
chr5 (178-228)||(30900066-30900116)
[»] chr2 (3 HSPs)
chr2 (165-219)||(3278209-3278263)
chr2 (165-199)||(12123781-12123815)
chr2 (110-228)||(28770558-28770671)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 10997380 - 10997159
Alignment:
Q  7 ggcacgatgggtgcctaacgtggaacaattctctcgggggatatgagcattatataagacttcattcttcatgctttgggaaagcttgaagagagaaact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10997380 ggcacgatgggtgcctaacgtggaacaattctctcgggggatatgagcattatataagacttcattcttcatgctttgggaaagcttgaagagagaaact 10997281  T
Q  107 tatgaaaccaaatgagggaactttaaggctgagtgtatgtggtgagagtttcttaatttcttaggttgggaaacatttttaaacaccttggatagtgaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10997280 tatgaaaccaaatgagggaactttaaggctgagtgtatgtggtgagagtttcttaatttcttaggttgggaaacatttttaaacaccttggatagtgaaa 10997181  T
Q  207 tgtcattagaggaatgataaaa 228  Q
    ||||||||||||||||||||||    
T  10997180 tgtcattagaggaatgataaaa 10997159  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 8281575 - 8281526
Alignment:
Q  171 gttgggaaacatttttaaacaccttggatagtgaaatgtcattagaggaa 220  Q
    |||||||| ||||| |||||||||||| |||||| || ||||||||||||    
T  8281575 gttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaa 8281526  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 192
Target Start/End: Original strand, 25116429 - 25116562
Alignment:
Q  57 tatataagacttcattcttcatgctttgggaaagcttga--agagagaaacttatgaaaccaaatgagggaactttaaggctgagtgtatgtggtgagag 154  Q
    |||||||| |||||||||||||| |||| || ||  |||  ||||||||||||   ||| |||| ||||||||||||  | ||||||| | | |||||||    
T  25116429 tatataagtcttcattcttcatgttttgagagagtatgaagagagagaaacttgaaaaatcaaacgagggaactttagagttgagtgtcttttgtgagag 25116528  T
Q  155 tttcttaatttcttaggttgggaaacatttttaaacac 192  Q
    |||    |||| || ||||||||||||||| |||||||    
T  25116529 ttt----atttattgggttgggaaacatttgtaaacac 25116562  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 31513164 - 31513230
Alignment:
Q  162 atttcttaggttgggaaacatttttaaacaccttggatagtgaaatgtcattagaggaatgataaaa 228  Q
    ||||||| ||||| ||||||||| ||||||||||| ||||||| || |||||||||||| |||||||    
T  31513164 atttcttgggttgagaaacatttgtaaacaccttgaatagtgagatttcattagaggaaggataaaa 31513230  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 7597429 - 7597481
Alignment:
Q  50 tgagcattatataagacttcattcttcatgctttgggaaagcttgaagagaga 102  Q
    |||||| |||||||| |||||||||||||| |||| ||| |||| ||||||||    
T  7597429 tgagcactatataaggcttcattcttcatgttttgtgaaggcttcaagagaga 7597481  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 18141758 - 18141790
Alignment:
Q  165 tcttaggttgggaaacatttttaaacaccttgg 197  Q
    |||||||||||||||||||| ||||||||||||    
T  18141758 tcttaggttgggaaacatttgtaaacaccttgg 18141790  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 29100487 - 29100405
Alignment:
Q  100 agaaacttatgaaaccaaatgagggaactttaaggctgagtgtatgtggtgagagtttcttaatttcttaggttgggaaacattttt 186  Q
    ||||||||  ||||||||| ||||||| |||| || ||||||| | ||||||||||||    |||||||||||||||||||||||||    
T  29100487 agaaacttgggaaaccaaaggagggaagtttagggttgagtgtctttggtgagagttt----atttcttaggttgggaaacattttt 29100405  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 30517887 - 30517983
Alignment:
Q  89 agcttgaagagagaaacttatgaaaccaaatgagggaactttaaggctgagtgtatgtggtgagagtttcttaatttcttaggttgggaaacatttttaa 188  Q
    ||||| |||||||||||||  |||| |||||||||||||||||  | ||||||| | ||||||||||||    ||||||||| || |||||||||| |||    
T  30517887 agcttcaagagagaaacttgggaaatcaaatgagggaactttagagttgagtgtctttggtgagagttt----atttcttagattaggaaacatttgtaa 30517982  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 30900116 - 30900066
Alignment:
Q  178 aacatttttaaacaccttggatagtgaaatgtcattagaggaatgataaaa 228  Q
    ||||||| |||||||||||| |||||| || |||||||||||| |||||||    
T  30900116 aacatttataaacaccttgggtagtgagatttcattagaggaaggataaaa 30900066  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 3278263 - 3278209
Alignment:
Q  165 tcttaggttgggaaacatttttaaacaccttggatagtgaaatgtcattagagga 219  Q
    |||| |||||| |||||||| ||||||||||||||||||| || |||||| ||||    
T  3278263 tcttgggttggaaaacatttgtaaacaccttggatagtgagatttcattatagga 3278209  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 12123815 - 12123781
Alignment:
Q  165 tcttaggttgggaaacatttttaaacaccttggat 199  Q
    |||||||||||||||||||| ||||||||||||||    
T  12123815 tcttaggttgggaaacatttataaacaccttggat 12123781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 28770558 - 28770671
Alignment:
Q  110 gaaaccaaatgagggaactttaaggctgagtgtatgtggtgagagtttcttaatttcttaggttgggaaacatttttaaacaccttggatagtgaaatgt 209  Q
    ||||||||| |  ||||||||| || ||||||| | ||||||| ||||     |||||| |||||| |||||||| |||||||||||| |||||| || |    
T  28770558 gaaaccaaagggtggaactttagggttgagtgtctttggtgagtgttt-----tttctttggttggaaaacatttgtaaacaccttgggtagtgagatct 28770652  T
Q  210 cattagaggaatgataaaa 228  Q
    ||||||  ||| |||||||    
T  28770653 cattagctgaaggataaaa 28770671  T

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