View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_251 (Length: 220)
Name: NF1139_low_251
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_251 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 41859797 - 41859933
Alignment:
| Q |
1 |
tagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatcat |
100 |
Q |
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| T |
41859797 |
tagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatcat |
41859896 |
T |
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| Q |
101 |
gtgaacttacatatgaggagctttgtttaactttcat |
137 |
Q |
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| T |
41859897 |
gtgaacttacatatgaggagctttgtttaactttcat |
41859933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 41887698 - 41887831
Alignment:
| Q |
1 |
tagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41887698 |
tagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatcat |
41887797 |
T |
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| Q |
101 |
gtgaacttacatatgaggagctttgtttaacttt |
134 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41887798 |
gtgaacttacatatgaggagctttgtttaacttt |
41887831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 41878668 - 41878800
Alignment:
| Q |
1 |
tagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagta-gaaacccttcaattattcatcatca |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||| | ||| | |||||||||||||||||||| |||| |
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| T |
41878668 |
tagttgatcaaataaatgattatgtacttaagttgattcctggtacgtgtaattagttaaccatc--agtagaaagaaacccttcaattattcattatca |
41878765 |
T |
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| Q |
100 |
tgtgaacttacatatgaggagctttgtttaacttt |
134 |
Q |
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| T |
41878766 |
tgtgaacttaaatttgaggagctttgtttaacttt |
41878800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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