View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_258 (Length: 205)
Name: NF1139_low_258
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_258 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 40276520 - 40276714
Alignment:
| Q |
1 |
tcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttt |
100 |
Q |
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| T |
40276520 |
tcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttt |
40276619 |
T |
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| Q |
101 |
tggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctg |
195 |
Q |
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| T |
40276620 |
tggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctg |
40276714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 39625240 - 39625429
Alignment:
| Q |
1 |
tcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttt |
100 |
Q |
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|||||||||||||||| ||||||||||| ||| |||||||||||||||||| | ||| ||||||||||||||||||||||||||||| | ||| || || |
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| T |
39625240 |
tcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggctgagaaagctt |
39625339 |
T |
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| Q |
101 |
tggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgt |
190 |
Q |
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| T |
39625340 |
tgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgt |
39625429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 39634790 - 39634979
Alignment:
| Q |
1 |
tcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttt |
100 |
Q |
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|||||||||||||||| ||||||||||| ||| |||||||||||||||||| | ||| ||||||||||||||||||||||||||||| | ||| || || |
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| T |
39634790 |
tcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggctgagaaagctt |
39634889 |
T |
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| Q |
101 |
tggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgt |
190 |
Q |
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|| ||||| ||||||||||||| | |||||| ||||||||| ||||||||||||||||||| ||||| || || |||||||||||||| |
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| T |
39634890 |
tgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgt |
39634979 |
T |
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