View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_26 (Length: 521)
Name: NF1139_low_26
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 10 - 515
Target Start/End: Original strand, 6625206 - 6625711
Alignment:
| Q |
10 |
aagaatatgtcgtgtgaaattccgaacaacggattctgttatcgcaccacagtggtcccgaacgtatttatttattgaaccaggatggataaattccaaa |
109 |
Q |
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| T |
6625206 |
aagaatatgtcgtgtgaaattccgaacaacggattctgttatcgcaccacagtggtcccgaacgtatttatttattgaaccaggatggataaattccaaa |
6625305 |
T |
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| Q |
110 |
taaatataaaacttgtcttctatctgaaaatattatgacttataattaggttgcgtggcatttctatcnnnnnnnttacttatcatggacacaggactcc |
209 |
Q |
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| T |
6625306 |
taaatataaaacttgtcttctatctgaaaatattatgacttataattaggttgtgtggcatttctatcaaaaaaattacttatcatggacacaggactcc |
6625405 |
T |
|
| Q |
210 |
taatcaacatttagagtacttactatttcactaccgtaatactgcacaatatttggatgttgtagatggctgagaactttaatttcctgaaaaagaaatg |
309 |
Q |
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| T |
6625406 |
taatcaacatttagagtacttactatttcactaccgtaatactgcacaatatttggatgttgtagatggctgagaactttaatttcctgaaaaagaaatg |
6625505 |
T |
|
| Q |
310 |
ggtacaaaatagtaataaggatcaagtgaactaacaataaaaaatatcttgaatagctaagtcatttcagatagcaaattgatgagataatttgatcaca |
409 |
Q |
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| T |
6625506 |
ggtacaaaatagtaataaggatcaagtgagctaacaataaaaaatatcttgaatagctaagtcatttcagatagcaaattgatgagataatttgatcaca |
6625605 |
T |
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| Q |
410 |
catccatctccccccaaaaattacatatccaattgtcgagaatccaaagcaatgagcaatgcagtctgcatctaggctagcttggaatgaaatttattgt |
509 |
Q |
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| T |
6625606 |
catccatctccccccaaaaattacatatccaattgtcgagaatccaaagcaatgagcaatgcagtctgcatctaggctagcttggaatgaaatttattgt |
6625705 |
T |
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| Q |
510 |
ctctat |
515 |
Q |
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| T |
6625706 |
ctctat |
6625711 |
T |
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