View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_260 (Length: 204)
Name: NF1139_low_260
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_260 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 23896593 - 23896786
Alignment:
| Q |
1 |
tataagttctaaatagaggccacgttaactgttatatcggtaaaacggtttgtagtggatctcaaagcatagcggttctaaaaactctatattattttaa |
100 |
Q |
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| T |
23896593 |
tataagttctaaatagaggccactttaactgttatatcggtaaaacggtttgtagtggatctcaaagcatagcggttctaaaacctctatattattttaa |
23896692 |
T |
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| Q |
101 |
atggaatagttttaaattgcctctaannnnnnnnaaaagaaattgttgatcgtgatccattgcttcttcttcctcatttttctatgttcctttg |
194 |
Q |
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| T |
23896693 |
atggaatagttttaaattgcctctaattttttttaaaagaaattgttgatcgtgatccattgcttcttcttcctcatttttctatgttcctttg |
23896786 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 17120085 - 17120126
Alignment:
| Q |
148 |
gatcgtgatccattgcttcttcttcctcatttttctatgttc |
189 |
Q |
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| T |
17120085 |
gatcgcgatccattgtttcttcttcctcatttttctatgttc |
17120126 |
T |
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