View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_28 (Length: 514)

Name: NF1139_low_28
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_28
NF1139_low_28
[»] chr6 (2 HSPs)
chr6 (303-506)||(6761198-6761401)
chr6 (96-291)||(6761443-6761638)
[»] chr4 (3 HSPs)
chr4 (316-436)||(9764652-9764772)
chr4 (216-248)||(47064493-47064525)
chr4 (216-248)||(53301943-53301975)
[»] chr8 (1 HSPs)
chr8 (212-248)||(25640570-25640606)
[»] chr3 (1 HSPs)
chr3 (212-248)||(7404554-7404590)
[»] chr2 (3 HSPs)
chr2 (216-248)||(30268617-30268649)
chr2 (212-248)||(31332385-31332421)
chr2 (212-248)||(31339115-31339151)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 303 - 506
Target Start/End: Complemental strand, 6761401 - 6761198
Alignment:
Q  303 actttggtttatgctctacctccggcaaaattttctaccaaattgttgtgcaaatacaattgtatggatcatcatctactttggtttgcttaatttgtag 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6761401 actttggtttatgctctacctccggcaaaattttctaccaaattgtagtgcaaatacaattgtatggatcatcatctactttggtttgctaaatttgtag 6761302  T
Q  403 tagatgaaatttgatttgatttatgtgattatggtctgtatcaagctattatatggagatataaagagaggtgtgatgtttctgctcatttatctagaat 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6761301 tagatgaaatttgatttgatttatgtgattatggtctgtatcaagctattatatggagatataaagagaggtgtgttgtttctgctcatttatctagaat 6761202  T
Q  503 tatc 506  Q
    ||||    
T  6761201 tatc 6761198  T

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Target: chr6; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 96 - 291
Target Start/End: Complemental strand, 6761638 - 6761443
Alignment:
Q  96 aaaagttctttatttggaaattttgacttcgagttgcgtacactcagcttattgacttgaaatatgacacttataacttattttgtgatagtgttcacac 195  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6761638 aaaagttctttatttggaaagtttgacttcgagttgtgtacactcatcttattgacttgaaatatgacacttataacttattttttgatagtgttcacac 6761539  T
Q  196 ccctacttttctatgtaatgtatgtgattagttgtttggatgatttatgtgtgcaatcctcactttcagattcatacaagaaaagttcattactag 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6761538 ccctacttttctatgtaatgtatgtgattagttgtttggatgatttatgtgtgcaatcctcactttcagattcatacaagaaaagttcattactag 6761443  T

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Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 316 - 436
Target Start/End: Complemental strand, 9764772 - 9764652
Alignment:
Q  316 ctctacctccggcaaaattttctaccaaattgttgtgcaaatacaattgtatggatcatcatctactttggtttgcttaatttgtagtagatgaaatttg 415  Q
    |||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  9764772 ctctacatctggcaaaattttctactaaattgttgtgcaaatacaattgtatggatcatcatctactttggtttgctaattttgtagtagatgaaatttg 9764673  T
Q  416 atttgatttatgtgattatgg 436  Q
    ||||| |||||||||||||||    
T  9764672 atttggtttatgtgattatgg 9764652  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 47064493 - 47064525
Alignment:
Q  216 tatgtgattagttgtttggatgatttatgtgtg 248  Q
    |||||| ||||||||||||||||||||||||||    
T  47064493 tatgtgtttagttgtttggatgatttatgtgtg 47064525  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 53301975 - 53301943
Alignment:
Q  216 tatgtgattagttgtttggatgatttatgtgtg 248  Q
    |||||| ||||||||||||||||||||||||||    
T  53301975 tatgtgtttagttgtttggatgatttatgtgtg 53301943  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 25640606 - 25640570
Alignment:
Q  212 aatgtatgtgattagttgtttggatgatttatgtgtg 248  Q
    |||||||||| |||||||||||| |||||||||||||    
T  25640606 aatgtatgtgtttagttgtttggctgatttatgtgtg 25640570  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 7404554 - 7404590
Alignment:
Q  212 aatgtatgtgattagttgtttggatgatttatgtgtg 248  Q
    |||||||||| |||||||||||| |||||||||||||    
T  7404554 aatgtatgtgtttagttgtttggctgatttatgtgtg 7404590  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 30268649 - 30268617
Alignment:
Q  216 tatgtgattagttgtttggatgatttatgtgtg 248  Q
    |||||| ||||||||||||||||||||||||||    
T  30268649 tatgtgtttagttgtttggatgatttatgtgtg 30268617  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 31332385 - 31332421
Alignment:
Q  212 aatgtatgtgattagttgtttggatgatttatgtgtg 248  Q
    |||||||||| |||||||||||| |||||||||||||    
T  31332385 aatgtatgtgtttagttgtttggctgatttatgtgtg 31332421  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 31339115 - 31339151
Alignment:
Q  212 aatgtatgtgattagttgtttggatgatttatgtgtg 248  Q
    |||||||||| |||||||||||| |||||||||||||    
T  31339115 aatgtatgtgtttagttgtttggctgatttatgtgtg 31339151  T

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