View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_3 (Length: 810)

Name: NF1139_low_3
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_3
NF1139_low_3
[»] chr6 (5 HSPs)
chr6 (126-327)||(2987015-2987228)
chr6 (690-808)||(2928454-2928576)
chr6 (126-327)||(2985959-2986155)
chr6 (767-808)||(3002732-3002773)
chr6 (81-120)||(2986918-2986957)
[»] chr7 (3 HSPs)
chr7 (17-67)||(34078727-34078777)
chr7 (81-120)||(3340184-3340223)
chr7 (193-227)||(3340362-3340396)
[»] chr8 (2 HSPs)
chr8 (570-660)||(37201067-37201157)
chr8 (87-117)||(7473110-7473140)
[»] scaffold0024 (2 HSPs)
scaffold0024 (126-165)||(33790-33829)
scaffold0024 (81-118)||(43204-43241)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 126 - 327
Target Start/End: Original strand, 2987015 - 2987228
Alignment:
Q  126 tccaaccttgaatcgattttggaacaacaatcacttaaaaattatttagagtttccac-gacaagttgatttagtacataactcacgtttgatcttgtga 224  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  2987015 tccaaccttgaatcgaatttggaacaacaatcacttaaaa-ttattaacagtttccattgacaagttgatttagtacataactcacgtttgatcttgtga 2987113  T
Q  225 acttacgtcgcatgtcttccaac-------tcacaaccaaaaaagcaccacattaatta-----tttttatcatatatccctacatttatgctctcactc 312  Q
    |||||||||   |||||||||||       |||||||||||||||||| ||||||||||     |||||| ||||||||| ||||||||||||||||| |    
T  2987114 acttacgtcaagtgtcttccaactcacaagtcacaaccaaaaaagcacgacattaattattatttttttaccatatatccttacatttatgctctcaccc 2987213  T
Q  313 tccattttacttaaa 327  Q
    |||||||||||||||    
T  2987214 tccattttacttaaa 2987228  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 690 - 808
Target Start/End: Original strand, 2928454 - 2928576
Alignment:
Q  690 tggtgattctagtatgattccagag-ctgtttcaac---tagtctgtcaatctctggtgtactgtttcgacagtttttcagtttcttagatttgtgtatt 785  Q
    ||||||||| ||||||||| ||| | ||||||||||   |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||    
T  2928454 tggtgattcaagtatgattgcaggggctgtttcaacaactagtctgtcaatctctggtgtactgtttgggcggtttttcagtttcttagatttgtgtatt 2928553  T
Q  786 ggagctgttctattgcgtttttc 808  Q
    |||| |||||||||  |||||||    
T  2928554 ggagttgttctattttgtttttc 2928576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 126 - 327
Target Start/End: Original strand, 2985959 - 2986155
Alignment:
Q  126 tccaaccttgaatcgattttggaacaacaatcacttaaaaattatttagagtttccacgacaagttgatttagtacataactcacgtttgatcttgtgaa 225  Q
    ||||||||| |||| | ||||||||||||||||| ||||| ||| |||||||  |||  |||| ||||||||| ||||||||| ||||||| | | ||||    
T  2985959 tccaaccttaaatccagtttggaacaacaatcacataaaa-ttagttagagtccccaa-acaatttgatttagaacataactctcgtttgaccctatgaa 2986056  T
Q  226 cttacgtcgcatgtcttccaactcacaaccaaaaaagcaccacattaattatttttatcatatatccctacatttatgctctcactc-tccattttactt 324  Q
    ||||||||   || ||||||||||||||||||| |||||| ||    ||  ||||| ||||||| ||||||||||||  |||||||| ||||||||||||    
T  2986057 cttacgtcaagtgccttccaactcacaaccaaacaagcacgac----atcttttttttcatatacccctacatttatagtctcactcttccattttactt 2986152  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 767 - 808
Target Start/End: Complemental strand, 3002773 - 3002732
Alignment:
Q  767 tttcttagatttgtgtattggagctgttctattgcgtttttc 808  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  3002773 tttcttatatttgtgtattggagctgttctattgcgtttttc 3002732  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 2986918 - 2986957
Alignment:
Q  81 ataagagagtgcaacacttgagtaaatggtaaattgatta 120  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  2986918 ataagagagtgcaacacttgagtaaatggtaaatttatta 2986957  T

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Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 34078777 - 34078727
Alignment:
Q  17 ttagtctcaaaaatcattcgagataggcatataggaaaatctccatctttg 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34078777 ttagtctcaaaaatcattcgagataggcatataggaaaatctccatctttg 34078727  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 3340184 - 3340223
Alignment:
Q  81 ataagagagtgcaacacttgagtaaatggtaaattgatta 120  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  3340184 ataagagagtgcaacacttgactaaatgataaattgatta 3340223  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 3340362 - 3340396
Alignment:
Q  193 atttagtacataactcacgtttgatcttgtgaact 227  Q
    |||||||||||||||||||||||||| ||||||||    
T  3340362 atttagtacataactcacgtttgatcatgtgaact 3340396  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 570 - 660
Target Start/End: Complemental strand, 37201157 - 37201067
Alignment:
Q  570 taattccctctacattgtcagtgttagttaggcggcttttccttaataagctttattctaaggataatcttagcaaaagaggcgtttattt 660  Q
    |||||||||||| |||||  ||||||||| ||| |||||||| ||||| ||||  ||||||||| ||||||||||||||||  ||||||||    
T  37201157 taattccctctaaattgtttgtgttagtttggcagcttttccataataggcttccttctaaggaaaatcttagcaaaagagaggtttattt 37201067  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 117
Target Start/End: Original strand, 7473110 - 7473140
Alignment:
Q  87 gagtgcaacacttgagtaaatggtaaattga 117  Q
    |||||||||||||||||||||||||||||||    
T  7473110 gagtgcaacacttgagtaaatggtaaattga 7473140  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 33829 - 33790
Alignment:
Q  126 tccaaccttgaatcgattttggaacaacaatcacttaaaa 165  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  33829 tccaaccttaaatcgattttggaacaacaatcacgtaaaa 33790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 43241 - 43204
Alignment:
Q  81 ataagagagtgcaacacttgagtaaatggtaaattgat 118  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  43241 ataagagactgcaacacttgagtaaatggtgaattgat 43204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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