View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_30 (Length: 512)
Name: NF1139_low_30
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 39244871 - 39245275
Alignment:
| Q |
13 |
aatatgtaaagaaagaaatgtcatgtgaaagggatgaaatctcagattaaggttttaattttttgaaaatccttattgtctcccatctcaaattcatcat |
112 |
Q |
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| T |
39244871 |
aatatgtaaagaaagaaatgtcatgtgaaagggatgaaatctcagattaaggttttaattttttgaaaatccttattgtctcccatctcaaattcatcat |
39244970 |
T |
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| Q |
113 |
gtcaactctttagtgtttttcttcattttagttgttggtggatgtaaaattaaacacatgacgaacaatgaaagaaattcaattgcctnnnnnnnnnnnn |
212 |
Q |
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| T |
39244971 |
gtcaactctttagtgtttttcttcattttagttgttgctggatgtaaaattaaacgcatgacgaacaacgaaagaaattcaattgcctaaaaaaaaaaaa |
39245070 |
T |
|
| Q |
213 |
-----cgaaagaaactctaatattggtttctagctccaccatggtcatagtgtagaatattggtgaagaagacgacgacaatatagaaaaatatgtaaga |
307 |
Q |
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| T |
39245071 |
aaaaacgaaagaaactctaatattggtttctagctccaccatggtcatagtgtagaatattggtgaagaagacgacgacaatatagaaaaatatgtaaga |
39245170 |
T |
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| Q |
308 |
acattgatgttcgtgaattattttttgggatgatttgagattttgtatatggtttataattttgcaattttaataaaaagtcacgttagtacgtgagtta |
407 |
Q |
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| T |
39245171 |
acattgatgttcgtgaattattttttgggatgatttgagattttgtatatggtttataattttgcaattttaataaaaagtcacgttagtacgtgagtta |
39245270 |
T |
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| Q |
408 |
attag |
412 |
Q |
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| T |
39245271 |
attag |
39245275 |
T |
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