View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_34 (Length: 504)
Name: NF1139_low_34
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 120 - 431
Target Start/End: Original strand, 1712277 - 1712595
Alignment:
| Q |
120 |
aataatagggttatagttctttatgttattccaaaagttagaggtataaaatatagaaatgttgtttaacaacatttagggttatttgtgacgagnnnnn |
219 |
Q |
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| T |
1712277 |
aataatagggttatagttctttatgttattccaaaagttagaggtataaaatatagaaatgttgtttaacaacatttagggttatttgtgacgagaaaaa |
1712376 |
T |
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| Q |
220 |
nnnttgaattcttatgtatattcattatgtgagaggtaaaagtgattctaggattataaaattgatgttgacatgttattttggatgcttttgaagataa |
319 |
Q |
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| T |
1712377 |
aa-ttgaattcttatgtatattcactatgtgagaggtaaaagtgattctaggattataaaattgatgttgacatgttattttggatgcttttgaagataa |
1712475 |
T |
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| Q |
320 |
ttgtttttgtctaaatagtaggttttaatttgaagttgagataaaacttgtctcaaaataaaaattagtttcaaacctttttaac--------ttataaa |
411 |
Q |
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| T |
1712476 |
ttgtttttgtctaaatagtaggttttaatttgaagttgagataaaacttgtctcaaaataaaaattagtttcaaacctttttaacaactgtttttataaa |
1712575 |
T |
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| Q |
412 |
ttcattattcaactaacttg |
431 |
Q |
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| T |
1712576 |
ttcattattcaactaacttg |
1712595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 493
Target Start/End: Original strand, 1712610 - 1712645
Alignment:
| Q |
458 |
gttacgttgccttgattttatatttgttggcttcat |
493 |
Q |
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| T |
1712610 |
gttacgttgccttgattttatagttgttggcttcat |
1712645 |
T |
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