View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_36 (Length: 496)
Name: NF1139_low_36
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 29 - 481
Target Start/End: Complemental strand, 7158276 - 7157824
Alignment:
| Q |
29 |
aaaaagtactacctcataattaacaatgctccctgaatgatgaagggcgacactgccaactaaaccatgagcagacataatgcatatctcagtagtaggt |
128 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7158276 |
aaaaagtactacctcgtaattaaagatgctccctgaatgatgaagggcgacactgccaactaaaccatgagcagacataatgcatatctcagtatcaggt |
7158177 |
T |
|
| Q |
129 |
tctgctactgcatggctataggctgctactttttcaatgatgtcctacaaccaagtgaaaaaacttattggtaaaaaccaatcttcnnnnnnntccaaac |
228 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
7158176 |
tctgctactgcctggctataggctgctactttttcaatgatgtcctacaaacaagtgaaaaaacttattggtaaaaaccaatcttcaaaaaaatccaacc |
7158077 |
T |
|
| Q |
229 |
aacaccagatatgtcagcaaaaacttccgaaaattgtataaacaaccagatttttaacatcatcaaaatcgacattaacattgcaatttataaagtaacc |
328 |
Q |
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| T |
7158076 |
accaccagataagtcagcaaaaacttccgaaaattgtataaacaaccagatttttaacatcatcaaaatcgacattaacattgcaatttataaagtaacc |
7157977 |
T |
|
| Q |
329 |
aattttnnnnnnntaaaatgtgaaaggtagtgtaatatataacatgttaatgtttgaattataggttccattgcatacctctcctggattcacaaagatc |
428 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7157976 |
aattttaaaaaaataaaatgtgaaaggtagtgtaatatataacatgttaatgtttgaattataggttccattgcatacctctcctggattcacaaagatc |
7157877 |
T |
|
| Q |
429 |
acatgtggaattatatcacttaggcgtgcattcaaggatgaaggaacattcat |
481 |
Q |
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| T |
7157876 |
acatgtggaattatatcacttaggcgtggattcaaggatgaaggaacattcat |
7157824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 28 - 437
Target Start/End: Complemental strand, 4863127 - 4862722
Alignment:
| Q |
28 |
caaaaagtactacctcataattaacaatgctccctgaatgatgaagggcgacactgccaactaaaccatgagcagacataatgcatatctcagtagtagg |
127 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || |||| |
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| T |
4863127 |
caaaaagtactaccttgtaattaataatgctccctaaatgatgaagggcgacagtgccaactaaaccatgagcagacaaaatgcatatctcaatattagg |
4863028 |
T |
|
| Q |
128 |
ttctgctactgcatggctataggctgctactttttcaatgatgtcctacaaccaagtgaaaaaacttattggtaaaaaccaatcttcnnnnnnntccaaa |
227 |
Q |
| |
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| |||||||||| |||||| |||||| |||||| |||| ||||||||||| | ||||||| || | ||||||||||||||| | ||| |
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| T |
4863027 |
tcctgctactgcctggctaaaggctgtaacttttgcaattatgtcctacaaaaa----aaaaaacatagtagtaaaaaccaatcttgaaaaaaattcaac |
4862932 |
T |
|
| Q |
228 |
caacaccagatatgtcagcaaaaacttccgaaaattgtataaacaaccagatttttaacatcatcaaaatcgacattaacattgcaatttataaagtaac |
327 |
Q |
| |
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|| ||||||| ||||| |||| | || | |||||| ||||||| |||| |||||||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
4862931 |
cacaaccagatctgtcaacaaacattttcaaaaattctataaacgaccacctttttaacattatcaaaatatacattaacattgtaatttataaagtaac |
4862832 |
T |
|
| Q |
328 |
caattttnnnnnnntaaaatgtgaaaggtagtgtaatatataacatgttaatgtttgaattataggttccattgcatacctctcctggattcacaaagat |
427 |
Q |
| |
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|| |||| | |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4862831 |
catttttttttgaaaagaatgtgaaagaaagtgtaatatataacatgttaatgttggaattataggttccattgcatacctctccttgattcacaaagat |
4862732 |
T |
|
| Q |
428 |
cacatgtgga |
437 |
Q |
| |
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|||||||||| |
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|
| T |
4862731 |
cacatgtgga |
4862722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 4812359 - 4812276
Alignment:
| Q |
29 |
aaaaagtactacctcataattaacaatgctccctgaatgatgaagggcgacactgccaactaaaccatgagcagacataatgca |
112 |
Q |
| |
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||||||||||||||| ||| |||||| | |||||| |||| |||||| || ||||||| |||||||||||||| | |||||| |
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|
| T |
4812359 |
aaaaagtactacctcgtaagtaacaacggaccctgactgataaagggcagcattgccaaccaaaccatgagcagaaagaatgca |
4812276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 14418323 - 14418423
Alignment:
| Q |
28 |
caaaaagtactacctcataattaacaatgctccctgaatgatgaagggcgacactgccaactaaaccatgagcagacataatgcatatctcagtagtagg |
127 |
Q |
| |
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||||||| ||||||||| || ||| ||| || || | |||||||| |||||| |||||||||||||||||||||| | |||||| ||||| ||| |||| |
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| T |
14418323 |
caaaaaggactacctcacaaataaaaattcttccaggttgatgaagtgcgacagtgccaactaaaccatgagcagaaagaatgcacatctctgtattagg |
14418422 |
T |
|
| Q |
128 |
t |
128 |
Q |
| |
|
| |
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|
| T |
14418423 |
t |
14418423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 14418502 - 14418552
Alignment:
| Q |
280 |
ttttaacatcatcaaaatcgacattaacattgcaatttataaagtaaccaa |
330 |
Q |
| |
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||||||||||||||||||| |||||| |||| ||| ||||||||||||||| |
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|
| T |
14418502 |
ttttaacatcatcaaaatctacattatcatttcaacttataaagtaaccaa |
14418552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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