View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_38 (Length: 492)
Name: NF1139_low_38
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 30 - 487
Target Start/End: Original strand, 35745159 - 35745628
Alignment:
| Q |
30 |
cattcagtgttctcataactatctgcaatgtgacatatnnnnnnnnnnnnnnnccaagaataatgattgtcattttacaacagatcaggaaactgaaatc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35745159 |
cattcagtgttctcataactatctgcaatgtgacatataaaaaaaaaaaa---ccaagaataatgattgtcattttacaacaga---ggaaactgaaatc |
35745252 |
T |
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| Q |
130 |
tgtcacttaatgttacgaagttaaactcttattatgtcacatacctcgcgcaaggaagcagaactgttacatggagctaagtccatgatatctctgaatg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745253 |
tgtcacttaatgttacgaagttaaactcttattatgtcacatacctcgcgcaaggaagcagaactgttacatggagctaagtccatgatatctctgaatg |
35745352 |
T |
|
| Q |
230 |
ccatgatcttcgtatgaatctctaccattaaaatcaattggtctgctcctacgaatgataactccattgactctccattttctttgctctgagcctttg- |
328 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745353 |
ccatgatcttcatatgaatctctaccattaaaatcaattggtctgctcctacgaatgataactccattgactctccattttctttgctctgagcctttga |
35745452 |
T |
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| Q |
329 |
-----------------aagacttcttaggtgtgctagagccttttatcactttcagtccctgcaagtgcttatataatatcaattaatagtgcctagga |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745453 |
agacttcttaggtgtgcaagacttcttaggtgtgctagagccttttatcactttcagtccctgcaagtgcttatataatatcaattaatagtgcctagga |
35745552 |
T |
|
| Q |
412 |
tatctcagatagataggtaatgctagacttccaacatcttctgcatgtcttgtctttcaatgttattcatctcact |
487 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35745553 |
tatctcagatagataggtaatgctaagcttccaacatcttctgcatgtcttgtctttcaatgttattcatgtcact |
35745628 |
T |
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