View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_42 (Length: 489)

Name: NF1139_low_42
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_42
NF1139_low_42
[»] chr4 (3 HSPs)
chr4 (97-480)||(25744219-25744608)
chr4 (346-480)||(25740519-25740653)
chr4 (399-480)||(17383423-17383504)
[»] chr2 (1 HSPs)
chr2 (399-480)||(8535008-8535089)
[»] scaffold0515 (1 HSPs)
scaffold0515 (199-239)||(10111-10151)
[»] scaffold0152 (2 HSPs)
scaffold0152 (199-239)||(27731-27771)
scaffold0152 (199-239)||(36507-36547)
[»] scaffold0055 (8 HSPs)
scaffold0055 (199-239)||(17958-17998)
scaffold0055 (199-239)||(20688-20728)
scaffold0055 (199-239)||(23927-23967)
scaffold0055 (199-239)||(37160-37200)
scaffold0055 (199-239)||(45009-45049)
scaffold0055 (199-239)||(57734-57774)
scaffold0055 (199-236)||(29273-29310)
scaffold0055 (199-239)||(76425-76464)
[»] scaffold0052 (8 HSPs)
scaffold0052 (199-239)||(8916-8956)
scaffold0052 (199-239)||(12118-12158)
scaffold0052 (199-239)||(16563-16603)
scaffold0052 (199-239)||(20931-20971)
scaffold0052 (199-239)||(39857-39897)
scaffold0052 (199-239)||(55338-55378)
scaffold0052 (199-236)||(66755-66792)
scaffold0052 (199-239)||(43328-43367)
[»] scaffold0986 (1 HSPs)
scaffold0986 (199-237)||(202-240)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 97 - 480
Target Start/End: Complemental strand, 25744608 - 25744219
Alignment:
Q  97 accaatctgcagaaacaatcatgaagggttgttaagtatataaaatatttcctct---acannnnnnnnn---atgaagaatgaattgaatcaacagtgg 190  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||    |||            |||||||||||||||||||||||||||    
T  25744608 accaatctgcagaaacaatcatgaagggttgttaagtgtatagaatatttcctcgcacacattttttttttttatgaagaatgaattgaatcaacagtgg 25744509  T
Q  191 atgaatctagtggatcgtggcagcaaggtcactctgccacttacaatactatgtcactcgtctgatgatatttccttgtacttggttttagtacataacc 290  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25744508 atgaatctagtggatcgtggcagcaaggtcactctaccacttacaatactatgtcactcgtctgataatatttccttgtacttggttttagtacataacc 25744409  T
Q  291 aacgggtgttatatggcgcaagggcaatgtaagtgcaaattactctgagaaggactatacagttaagttcaagtaaaagtgtaacatacccgggaaatgc 390  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25744408 aacgggtgttatatggcgcaagggcaatgtaagtgcaaattattctgagaaggactatacagttaagttcaagtaaaagtgtaacatacctgggaaatgc 25744309  T
Q  391 tttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataat 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25744308 tttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataat 25744219  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 346 - 480
Target Start/End: Complemental strand, 25740653 - 25740519
Alignment:
Q  346 tatacagttaagttcaagtaaaagtgtaacatacccgggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatct 445  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25740653 tatactgttaagtttaagtaaaagtgtaacataccagggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatct 25740554  T
Q  446 ctcctctgcgtagtcatgcaaataagtagaataat 480  Q
    |||||||||||||||||||||||||||||||||||    
T  25740553 ctcctctgcgtagtcatgcaaataagtagaataat 25740519  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 17383504 - 17383423
Alignment:
Q  399 aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataat 480  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||  ||||||||| ||||||    
T  17383504 aaaaagccttaaaacaacagcaactaaagcaattcattttccaatctctcctctgcatagtcataaaaataagtataataat 17383423  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 8535089 - 8535008
Alignment:
Q  399 aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataat 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  8535089 aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcatagtcatgaaaataagtagaataat 8535008  T

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Target: scaffold0515 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 10151 - 10111
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  10151 agtggatcgtggcagcaaggccactctgccacttacaatac 10111  T

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Target: scaffold0152 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 27771 - 27731
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  27771 agtggatcgtggcagcaaggccactctgccacttacaatac 27731  T

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Target: scaffold0152; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 36547 - 36507
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  36547 agtggatcgtggcagcaaggccactctgccacttacaatac 36507  T

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Target: scaffold0055 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 17998 - 17958
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  17998 agtggatcgtggcagcaaggccactctgccacttacaatac 17958  T

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Target: scaffold0055; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 20688 - 20728
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  20688 agtggatcgtggcagcaaggccactctgccacttacaatac 20728  T

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Target: scaffold0055; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 23927 - 23967
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  23927 agtggatcgtggcagcaaggccactctgccacttacaatac 23967  T

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Target: scaffold0055; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 37160 - 37200
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  37160 agtggatcgtggcagcaaggccactctgccacttacaatac 37200  T

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Target: scaffold0055; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 45009 - 45049
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  45009 agtggatcgtggcagcaaggccactctgccacttacaatac 45049  T

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Target: scaffold0055; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 57734 - 57774
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  57734 agtggatcgtggcagcaaggccactctgccacttacaatac 57774  T

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Target: scaffold0055; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 29310 - 29273
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaa 236  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29310 agtggatcgtggcagcaaggccactctgccacttacaa 29273  T

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Target: scaffold0055; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 76425 - 76464
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  76425 agtggatcgtggcagcaaggccactctg-cacttacaatac 76464  T

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Target: scaffold0052 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 8916 - 8956
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  8916 agtggatcgtggcagcaaggccactctgccacttacaatac 8956  T

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Target: scaffold0052; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 12118 - 12158
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12118 agtggatcgtggcagcaaggccactctgccacttacaatac 12158  T

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Target: scaffold0052; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 16603 - 16563
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  16603 agtggatcgtggcagcaaggccactctgccacttacaatac 16563  T

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Target: scaffold0052; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 20931 - 20971
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  20931 agtggatcgtggcagcaaggccactctgccacttacaatac 20971  T

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Target: scaffold0052; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 39897 - 39857
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  39897 agtggatcgtggcagcaaggccactctgccacttacaatac 39857  T

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Target: scaffold0052; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 55338 - 55378
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  55338 agtggatcgtggcagcaaggccactctgccacttacaatac 55378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 66755 - 66792
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaa 236  Q
    |||||||||||||||||||| |||||||||||||||||    
T  66755 agtggatcgtggcagcaaggccactctgccacttacaa 66792  T

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Target: scaffold0052; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 43328 - 43367
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaatac 239  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  43328 agtggatcgtggcagcaaggccactctg-cacttacaatac 43367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0986 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0986
Description:

Target: scaffold0986; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 240 - 202
Alignment:
Q  199 agtggatcgtggcagcaaggtcactctgccacttacaat 237  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  240 agtggatcgtggcagcaaggccactctgccacttacaat 202  T

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