View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_43 (Length: 483)
Name: NF1139_low_43
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 8e-62; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 348 - 472
Target Start/End: Original strand, 2774053 - 2774177
Alignment:
| Q |
348 |
ggatgaattgcattcatggtgaaaatgaaaagtatgtttccttttttctttcatgttcttaaaagagcttgttacttaaacttctcgtacatgtacattt |
447 |
Q |
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| T |
2774053 |
ggatgaattgcattcatggtgaaaatgaaaagtatgtttccttttttctttcatgttcttaaaagagcttgttacttaaactactcgtacatgtacattt |
2774152 |
T |
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| Q |
448 |
tgttttttgaaatatacacgttcat |
472 |
Q |
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| T |
2774153 |
tgttttttgaaatatacacgttcat |
2774177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 2773730 - 2773818
Alignment:
| Q |
25 |
cataaactatgtttttctctttcttccgttnnnnnnnttcttcaaatgctaattagagtagctattttcatttttcagcatagaaagta |
113 |
Q |
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| T |
2773730 |
cataaactatgtttttctctttcttccgttaaaaaaattcttcaaatgctaattagagtagctattttcatttttcagcatagaaagta |
2773818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 3057912 - 3057824
Alignment:
| Q |
25 |
cataaactatgtttttctctttcttccgttnnnnnnnttcttcaaatgctaattagagtagctattttcatttttcagcatagaaagta |
113 |
Q |
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| T |
3057912 |
cataaactatgtttttctctttcttccgttaaaaaaattcttcaaatgctaattagagtagctattttcatttttcagcatagaaagta |
3057824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 393 - 468
Target Start/End: Complemental strand, 3057401 - 3057326
Alignment:
| Q |
393 |
ttctttcatgttcttaaaagagcttgttacttaaacttctcgtacatgtacattttgttttttgaaatatacacgt |
468 |
Q |
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| T |
3057401 |
ttctttcacgttcttaaaagagcttgttacttaaactactcgtacatatacattttgttttttgaaatatacacgt |
3057326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 2773900 - 2773970
Alignment:
| Q |
195 |
tggagtgagtgagtgttggatgatcatatgtaaagtatactgaactcatatcaactacatgtcacataaaa |
265 |
Q |
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| T |
2773900 |
tggagggagtgagtgttggatgatcatatataaagtatactgaactcatatcaactacatgtcacataaaa |
2773970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 3057752 - 3057682
Alignment:
| Q |
195 |
tggagtgagtgagtgttggatgatcatatgtaaagtatactgaactcatatcaactacatgtcacataaaa |
265 |
Q |
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| T |
3057752 |
tggagggagtaagtgttggatgatcatatataaagtatactgaactcatatcaactacatgtcacataaaa |
3057682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 3057551 - 3057519
Alignment:
| Q |
364 |
tggtgaaaatgaaaagtatgtttccttttttct |
396 |
Q |
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| T |
3057551 |
tggtgaaaatgaaaagtatgtttccttttttct |
3057519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 445
Target Start/End: Complemental strand, 2761882 - 2761839
Alignment:
| Q |
402 |
gttcttaaaagagcttgttacttaaacttctcgtacatgtacat |
445 |
Q |
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| T |
2761882 |
gttcataaaagagcttgttacttaaactacacgtacatgtacat |
2761839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 261
Target Start/End: Original strand, 2526158 - 2526192
Alignment:
| Q |
227 |
aagtatactgaactcatatcaactacatgtcacat |
261 |
Q |
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| T |
2526158 |
aagtatactaaactcatatcaactacatgtcacat |
2526192 |
T |
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