View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_46 (Length: 467)
Name: NF1139_low_46
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 6586564 - 6586157
Alignment:
| Q |
14 |
ttctaaacacatcctggcggttgattgtcattggtcaacttttgtacattttcatcaccaaatcagatggtgcttggtgtggattctcatggctagcttt |
113 |
Q |
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| T |
6586564 |
ttctaaacacatcatggtggttgattgtcattggtcaacttttgtacattttcatcaccaaatcagatggtgcttggagtggattctcatggctagcttt |
6586465 |
T |
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| Q |
114 |
tgcagatttgtttaattttttgaaactttctttagcttcagctgttatgttatggtatattttcacaaacttcatattttcaattcgacttaattaatat |
213 |
Q |
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| T |
6586464 |
tgcagatttgtttaattttttgaaactttctttagcttcagctgttatgttatggtatattttcacaaacttcatattttcaattcgacttaattaatat |
6586365 |
T |
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| Q |
214 |
ttgaatggaaactttatgttgaattgaattttgaaaatgtgatggcagcttggagttttggtacttgatgatattggtggtgataacagggcatttggca |
313 |
Q |
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| T |
6586364 |
ttgaatggaaactttatgttgaattgaattttgaaaatgtgatggcagcttggagttttggtacttgatgatattggtggtgataacagggcatttggca |
6586265 |
T |
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| Q |
314 |
aaccctttggtgccattggatgctgtatctatttggtaaaagttctttagcatccctttctccaaattctcattgtgctgtatagacagtatagacataa |
413 |
Q |
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| T |
6586264 |
aaccctttggtgccattggatgctgtatctatttggtaaaagttctttagcatccctttctccaaattctcattgtgctgtataga-agtatagacataa |
6586166 |
T |
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| Q |
414 |
tattcaatt |
422 |
Q |
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| T |
6586165 |
tattcaatt |
6586157 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 419 - 461
Target Start/End: Complemental strand, 38570834 - 38570792
Alignment:
| Q |
419 |
aattaagatgtgttgttcatgaatttatttggtgagtgattag |
461 |
Q |
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| T |
38570834 |
aattaagatgtgttgttcatgaatttatttggtgagtgattag |
38570792 |
T |
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