View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_48 (Length: 455)

Name: NF1139_low_48
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_48
NF1139_low_48
[»] chr8 (3 HSPs)
chr8 (81-390)||(1089549-1089867)
chr8 (269-343)||(18964974-18965048)
chr8 (273-343)||(18952431-18952501)
[»] chr3 (3 HSPs)
chr3 (81-390)||(5129047-5129365)
chr3 (273-390)||(26569666-26569783)
chr3 (337-390)||(9689121-9689174)
[»] chr7 (1 HSPs)
chr7 (285-343)||(46841773-46841831)
[»] chr4 (1 HSPs)
chr4 (285-343)||(56290375-56290433)
[»] scaffold0004 (1 HSPs)
scaffold0004 (267-304)||(35895-35932)
[»] chr6 (1 HSPs)
chr6 (267-343)||(8366198-8366274)
[»] chr2 (1 HSPs)
chr2 (268-312)||(3216507-3216551)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 81 - 390
Target Start/End: Original strand, 1089549 - 1089867
Alignment:
Q  81 ccaattgccataaaaaggaaaatttgagtagctcatatttcctcacccgttgggtctc---------catcaatgcttactgggtaataattaatgttaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  1089549 ccaattgccataaaaaggaaaatttgagtagctcatatttcctcacccgttgggtctcattggtttccatcaatgcttactgggtaataattaatgttaa 1089648  T
Q  172 gtatgagaaaaatcaaacttgtgttgatgaatgaaaaacaaatggcattttaaatagctttacaccataattaccacctctactgtcaaaaaagtccgcg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1089649 gtatgagaaaaatcaaacttgtgttgatgaatgaaaaacaaatggcattttaaatagctttacaccataattaccacctctactgtcaaaaaaggccgcg 1089748  T
Q  272 ccggccgctataacggaaaaatcaggaccaccgcgacaggcaacgttggcgcgtggcagaaggggaaagcggacttatcagtagtaactcgataacttgt 371  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1089749 ccggccgccataacggaaaaatcaggaccaccgcgacaggcaacgttggcgcgtggcagaaggggaaagcggacttatcagtagtaactcgataacttgt 1089848  T
Q  372 actagttgtatattattgg 390  Q
    ||||||||||||| |||||    
T  1089849 actagttgtatataattgg 1089867  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 18965048 - 18964974
Alignment:
Q  269 gcgccggccgctataacggaaaaatcaggaccaccgcgacaggcaacgttggcgcgtggcagaaggggaaagcgg 343  Q
    ||||||||||||||| ||||||||||  ||||||||||  ||||  ||| || ||||| ||||||||||||||||    
T  18965048 gcgccggccgctatagcggaaaaatctagaccaccgcgctaggccgcgtcggtgcgtgccagaaggggaaagcgg 18964974  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 18952431 - 18952501
Alignment:
Q  273 cggccgctataacggaaaaatcaggaccaccgcgacaggcaacgttggcgcgtggcagaaggggaaagcgg 343  Q
    ||||||||||| ||||||||||  ||||||| ||  ||||  ||| |||||||| ||||||||||||||||    
T  18952431 cggccgctatagcggaaaaatctagaccaccacgctaggccgcgtcggcgcgtgtcagaaggggaaagcgg 18952501  T

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Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 81 - 390
Target Start/End: Complemental strand, 5129365 - 5129047
Alignment:
Q  81 ccaattgccataaaaaggaaaatttgagtagctcatatttcctcacccgttgggtctc---------catcaatgcttactgggtaataattaatgttaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| |||||||||||||||||||||    
T  5129365 ccaattgccataaaaaggaaaatttgagtagctcatatttcctcacccgttgggtctcattggtttccatcaatgcttgctgggtaataattaatgttaa 5129266  T
Q  172 gtatgagaaaaatcaaacttgtgttgatgaatgaaaaacaaatggcattttaaatagctttacaccataattaccacctctactgtcaaaaaagtccgcg 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129265 gtatgagaaaaatcaaacttgtgttgatgaatgaaaaacaaatggcattttaaatagctttacaccataattaccacctctactgtcaaaaaagtccgcg 5129166  T
Q  272 ccggccgctataacggaaaaatcaggaccaccgcgacaggcaacgttggcgcgtggcagaaggggaaagcggacttatcagtagtaactcgataacttgt 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129165 ccggccgctataacggaaaaatcaggaccaccgcgacaggcaacgttggcgcgtggcagaaggggaaagcggacttatcagtagtaactcgataacttgt 5129066  T
Q  372 actagttgtatattattgg 390  Q
    ||||| ||||||| |||||    
T  5129065 actagatgtatataattgg 5129047  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 390
Target Start/End: Original strand, 26569666 - 26569783
Alignment:
Q  273 cggccgctataacggaaaaatcaggaccaccgcgacaggcaacgttggcgcgtggcagaaggggaaagcggacttatcagtagtaactcgataacttgta 372  Q
    ||||||||||| |||||||||||||||||||||  |||||  ||| || ||||| |||||| | ||||||||| ||| | ||||||  | ||||||||||    
T  26569666 cggccgctatagcggaaaaatcaggaccaccgcaccaggccgcgtcggtgcgtgtcagaagtgaaaagcggacctataaatagtaaaacaataacttgta 26569765  T
Q  373 ctagttgtatattattgg 390  Q
    || ||||||||| |||||    
T  26569766 ctggttgtatataattgg 26569783  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 9689174 - 9689121
Alignment:
Q  337 aaagcggacttatcagtagtaactcgataacttgtactagttgtatattattgg 390  Q
    ||||||||| ||| | |||||| || |||||||||||||||||||||| |||||    
T  9689174 aaagcggacctataaatagtaaatcaataacttgtactagttgtatataattgg 9689121  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 46841773 - 46841831
Alignment:
Q  285 cggaaaaatcaggaccaccgcgacaggcaacgttggcgcgtggcagaaggggaaagcgg 343  Q
    |||||||||||||||||||||| |||||  ||||||||||||||| ||| |||||||||    
T  46841773 cggaaaaatcaggaccaccgcgccaggccgcgttggcgcgtggcataagtggaaagcgg 46841831  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 56290375 - 56290433
Alignment:
Q  285 cggaaaaatcaggaccaccgcgacaggcaacgttggcgcgtggcagaaggggaaagcgg 343  Q
    |||||||||||||||||||||  |||||  ||| |||||||| |||||| |||||||||    
T  56290375 cggaaaaatcaggaccaccgcaccaggccgcgtcggcgcgtgtcagaagtggaaagcgg 56290433  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 35932 - 35895
Alignment:
Q  267 ccgcgccggccgctataacggaaaaatcaggaccaccg 304  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  35932 ccgcgccgaccgctatagcggaaaaatcaggaccaccg 35895  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 8366274 - 8366198
Alignment:
Q  267 ccgcgccggccgctataacggaaaaatcaggaccaccgcgacaggcaacgttggcgcgtggcagaaggggaaagcgg 343  Q
    ||||||| |||||||||  ||||||||||||||||||||  |||||  ||| ||| | || |||||| |||||||||    
T  8366274 ccgcgccagccgctatagtggaaaaatcaggaccaccgcaccaggccgcgtcggcacatgtcagaagtggaaagcgg 8366198  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 3216507 - 3216551
Alignment:
Q  268 cgcgccggccgctataacggaaaaatcaggaccaccgcgacaggc 312  Q
    ||||||||| |||||| | |||||||||||||||||||| |||||    
T  3216507 cgcgccggctgctatagcagaaaaatcaggaccaccgcgccaggc 3216551  T

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