View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_49 (Length: 451)

Name: NF1139_low_49
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_49
NF1139_low_49
[»] chr8 (6 HSPs)
chr8 (30-451)||(41821111-41821532)
chr8 (362-417)||(9130439-9130496)
chr8 (344-418)||(1058202-1058278)
chr8 (359-445)||(14956396-14956484)
chr8 (381-420)||(38353255-38353294)
chr8 (377-417)||(40859837-40859877)
[»] chr7 (7 HSPs)
chr7 (359-446)||(21568728-21568817)
chr7 (344-447)||(9210494-9210599)
chr7 (359-414)||(47795848-47795905)
chr7 (343-447)||(33128622-33128728)
chr7 (343-413)||(38500051-38500123)
chr7 (344-401)||(27863842-27863901)
chr7 (359-400)||(33678673-33678716)
[»] chr3 (9 HSPs)
chr3 (359-420)||(31365398-31365461)
chr3 (359-420)||(1508707-1508770)
chr3 (359-447)||(30956725-30956815)
chr3 (359-447)||(30972537-30972627)
chr3 (359-417)||(402660-402720)
chr3 (383-417)||(50709494-50709528)
chr3 (377-414)||(36631183-36631220)
chr3 (358-420)||(39980609-39980673)
chr3 (383-415)||(23815970-23816002)
[»] chr2 (4 HSPs)
chr2 (341-418)||(41407164-41407243)
chr2 (344-400)||(1633692-1633750)
chr2 (359-415)||(39659639-39659697)
chr2 (377-437)||(26201929-26201989)
[»] chr5 (7 HSPs)
chr5 (359-414)||(19460508-19460565)
chr5 (350-418)||(7319139-7319209)
chr5 (364-417)||(39105360-39105415)
chr5 (347-414)||(12425450-12425519)
chr5 (359-415)||(10639835-10639892)
chr5 (367-417)||(10771997-10772049)
chr5 (377-418)||(42646556-42646597)
[»] chr1 (9 HSPs)
chr1 (344-447)||(37473265-37473370)
chr1 (359-417)||(5894282-5894342)
chr1 (359-417)||(14331670-14331730)
chr1 (359-417)||(47498962-47499022)
chr1 (359-419)||(33541835-33541897)
chr1 (364-415)||(41195325-41195378)
chr1 (359-420)||(1510435-1510498)
chr1 (342-399)||(33546597-33546656)
chr1 (344-417)||(38247320-38247394)
[»] scaffold0012 (1 HSPs)
scaffold0012 (380-420)||(207707-207747)
[»] chr4 (5 HSPs)
chr4 (365-417)||(31851343-31851395)
chr4 (362-400)||(53294236-53294274)
chr4 (364-417)||(35571951-35572006)
chr4 (391-447)||(43505871-43505927)
chr4 (377-437)||(41336662-41336722)
[»] chr6 (4 HSPs)
chr6 (365-420)||(18076083-18076140)
chr6 (359-418)||(34430597-34430658)
chr6 (347-417)||(264250-264322)
chr6 (343-420)||(6538382-6538461)
[»] scaffold0221 (1 HSPs)
scaffold0221 (362-412)||(2689-2741)
[»] scaffold0050 (1 HSPs)
scaffold0050 (359-412)||(58485-58540)


Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 30 - 451
Target Start/End: Original strand, 41821111 - 41821532
Alignment:
Q  30 agaagaagccttatgaggagaaataccaagctgaaaaagaggcttatttgcaagtaattacaaaggaaaaacgtgaaattgaggcaatgaaactcttaga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41821111 agaagaagccttatgaggagaaataccaagctgaaaaagaggcttatttgcaagtaattacaaaggaaaaacgtgaaattgaggcaatgaaactcttaga 41821210  T
Q  130 agaggaacagaagcagaagactgctatggaattgcttgaacagtttatgcaattcaaacaagatgcagaaaaggagagcaagaagaacaagaaagagaag 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41821211 agaggaacagaagcagaagactgctatggaattgcttgaacagtttatgcaattcaaacaagatgcagaaaaggagagcaagaagaacaagaaagagaag 41821310  T
Q  230 gatccattgaaaccaaagcatcctatgtcagcttttttcctgtttactaatgatagaagagcagccattcttgcagacaacaagggtatcttggaggtaa 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41821311 gatccattgaaaccaaagcatcctatgtcagcttttttcctgtttactaatgatagaagagcagctattcttgcagacaacaagggtatcttggaggtaa 41821410  T
Q  330 ttgatgatatgattgggcctgtttgacttaacagcttatttgcagcttagcacaagtgcttatcatgataatcacttatgtataagcttgcgtacgctgt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41821411 ttgatgatatgattgggcctgtttgacttaacagcttatttgcagcttagcacaagtgcttatcatgataagcacttatgtataagcttgcgtacgctgt 41821510  T
Q  430 tattatagaaaaagataatact 451  Q
    ||||||||||||||||||||||    
T  41821511 tattatagaaaaagataatact 41821532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 9130496 - 9130439
Alignment:
Q  362 agcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    |||||||||||||||||  ||||||||| | |||||||||||||||||||||||||||    
T  9130496 agcttatttgcagcttatagcacaagtggtcatcatgataatcacttatgtataagct 9130439  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 418
Target Start/End: Complemental strand, 1058278 - 1058202
Alignment:
Q  344 gggcctgtttgacttaacagcttatttgcagct--tagcacaagtgcttatcatgataatcacttatgtataagctt 418  Q
    |||||||||||| | ||||||||||||||||||  ||||||||| |||||  ||||||| | |||||||||||||||    
T  1058278 gggcctgtttgaataaacagcttatttgcagcttatagcacaagcgcttactatgataagcgcttatgtataagctt 1058202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 445
Target Start/End: Complemental strand, 14956484 - 14956396
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgcgtacgctgttattatagaaaaagat 445  Q
    |||| |||||||||||||||  ||||||  |||||||||||||| ||||||||||||||||||| || ||| || |||| | |||||||    
T  14956484 aacaacttatttgcagcttatagcacaatcgcttatcatgataagcacttatgtataagcttgcataagctatttttattgtaaaagat 14956396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 38353255 - 38353294
Alignment:
Q  381 acaagtgcttatcatgataatcacttatgtataagcttgc 420  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  38353255 acaagtgcttatcatgataatcgcttatgtataagcttgc 38353294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 40859877 - 40859837
Alignment:
Q  377 tagcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  40859877 tagcacaagtgcttatcatgataagcgcttatgtataagct 40859837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 446
Target Start/End: Complemental strand, 21568817 - 21568728
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgcgtacgctgttattatagaaaaagata 446  Q
    |||||||| |||||||||||  ||| |||||||||||||||||| ||||||||||||||||||| || ||| || |||||| ||||||||    
T  21568817 aacagcttgtttgcagcttatagcataagtgcttatcatgataagcacttatgtataagcttgcataagctatttttatagcaaaagata 21568728  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 447
Target Start/End: Original strand, 9210494 - 9210599
Alignment:
Q  344 gggcctgtttgacttaacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgcgtacgctgttattatagaaaa 441  Q
    |||||||||||  | ||||||||||||||||||||  || |||    |||||||||||||| ||||||||||||||||| || |||  | ||||||||||    
T  9210494 gggcctgtttggataaacagcttatttgcagcttatagcgcaaacatttatcatgataatcgcttatgtataagcttgcataagctacttttatagaaaa 9210593  T
Q  442 agataa 447  Q
    | ||||    
T  9210594 aaataa 9210599  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 414
Target Start/End: Original strand, 47795848 - 47795905
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataa 414  Q
    ||||||||||||||||||||  ||| ||| |||||||||||||| |||||||||||||    
T  47795848 aacagcttatttgcagcttatagcataagcgcttatcatgataaccacttatgtataa 47795905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 447
Target Start/End: Original strand, 33128622 - 33128728
Alignment:
Q  343 tgggcctgtttgacttaacagcttatttgcagctt--agcacaagtgcttatcatgataatcacttatgtataagcttgcgtacgctgttattatagaaa 440  Q
    ||||||||||||  | |||||||||||||||||||  |||||||   |||||||||||||   |||||| |||||||| | |||| | || |||||||||    
T  33128622 tgggcctgtttggataaacagcttatttgcagcttacagcacaaacacttatcatgataagtgcttatgcataagcttacttacgttatttttatagaaa 33128721  T
Q  441 aagataa 447  Q
     ||||||    
T  33128722 gagataa 33128728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 413
Target Start/End: Complemental strand, 38500123 - 38500051
Alignment:
Q  343 tgggcctgtttgacttaacagcttatttgcagct--tagcacaagtgcttatcatgataatcacttatgtata 413  Q
    |||||||||||   | |||||||||||||||| |  ||||||||| |||||||||||||| | ||||||||||    
T  38500123 tgggcctgtttagataaacagcttatttgcagtttatagcacaagcgcttatcatgataagcgcttatgtata 38500051  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 401
Target Start/End: Complemental strand, 27863901 - 27863842
Alignment:
Q  344 gggcctgtttgacttaacagcttatttgcagctta--gcacaagtgcttatcatgataat 401  Q
    |||||||||||  | |||| |||||||| ||||||  |||||||||||||||||||||||    
T  27863901 gggcctgtttggataaacaacttatttgtagcttatagcacaagtgcttatcatgataat 27863842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 33678673 - 33678716
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataa 400  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  33678673 aacagcttatttgcatcttatagcacaagtgcttatcatgataa 33678716  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 31365461 - 31365398
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgc 420  Q
    ||||||||||||||||||||  ||||||||| |||||||||||| |||||||||||||||||||    
T  31365461 aacagcttatttgcagcttatagcacaagtgattatcatgataagcacttatgtataagcttgc 31365398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 1508770 - 1508707
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgc 420  Q
    ||||||||||||||| ||||  |||||||||||||||||||||| | |||||||||||||||||    
T  1508770 aacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgc 1508707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 447
Target Start/End: Complemental strand, 30956815 - 30956725
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgcgtacgctgttattatagaaaaagataa 447  Q
    ||||||||||||||||||||  ||||||| |||||||||||||| || ||||| |||||||| | || ||| ||  ||||| |||||||||    
T  30956815 aacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagctatttctatagcaaaagataa 30956725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 447
Target Start/End: Complemental strand, 30972627 - 30972537
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgcgtacgctgttattatagaaaaagataa 447  Q
    ||||||||||||||||||||  ||||||| |||||||||||||| || ||||| |||||||| | || ||| ||  ||||| |||||||||    
T  30972627 aacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagctatttctatagcaaaagataa 30972537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 402720 - 402660
Alignment:
Q  359 aacagcttatttgcagct--tagcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    |||| |||||||||||||  ||||||||||||||||||||||||   ||||||||||||||    
T  402720 aacaacttatttgcagctcatagcacaagtgcttatcatgataagggcttatgtataagct 402660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 50709494 - 50709528
Alignment:
Q  383 aagtgcttatcatgataatcacttatgtataagct 417  Q
    |||||||||||||||||| ||||||||||||||||    
T  50709494 aagtgcttatcatgataaacacttatgtataagct 50709528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 36631220 - 36631183
Alignment:
Q  377 tagcacaagtgcttatcatgataatcacttatgtataa 414  Q
    |||||||||||||||||||||||| || ||||||||||    
T  36631220 tagcacaagtgcttatcatgataagcaattatgtataa 36631183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 39980609 - 39980673
Alignment:
Q  358 taacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgc 420  Q
    |||||||||||||||||||||  | ||||   ||||||||||||| |||||||||||||| ||||    
T  39980609 taacagcttatttgcagcttataggacaaacacttatcatgataagcacttatgtataagtttgc 39980673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 23815970 - 23816002
Alignment:
Q  383 aagtgcttatcatgataatcacttatgtataag 415  Q
    |||||||||||||||||| ||||||||||||||    
T  23815970 aagtgcttatcatgataagcacttatgtataag 23816002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 41407164 - 41407243
Alignment:
Q  341 attgggcctgtttgacttaacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagctt 418  Q
    ||||| ||||||||  | |||||||| |||||||||||  ||||||| |||||||||||||| |||||||||||||||||    
T  41407164 attggccctgtttggataaacagcttgtttgcagcttatagcacaagcgcttatcatgataagcacttatgtataagctt 41407243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 1633750 - 1633692
Alignment:
Q  344 gggcctgtttgacttaacagcttatttgcagct--tagcacaagtgcttatcatgataa 400  Q
    |||||||||||  | ||||||||||||||||||  ||||| ||||||||||||||||||    
T  1633750 gggcctgtttggataaacagcttatttgcagcttatagcagaagtgcttatcatgataa 1633692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 39659697 - 39659639
Alignment:
Q  359 aacagcttatttgcagcttag--cacaagtgcttatcatgataatcacttatgtataag 415  Q
    |||| ||||||||||||||||  ||||| ||||||||||||||| | ||||||||||||    
T  39659697 aacaacttatttgcagcttagagcacaaatgcttatcatgataagcgcttatgtataag 39659639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 26201929 - 26201989
Alignment:
Q  377 tagcacaagtgcttatcatgataatcacttatgtataagcttgcgtacgctgttattatag 437  Q
    ||||||||| |||||||||||||| | ||||| ||||||||||| || ||| || ||||||    
T  26201929 tagcacaagcgcttatcatgataagcccttatatataagcttgcataagctatttttatag 26201989  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 414
Target Start/End: Complemental strand, 19460565 - 19460508
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataa 414  Q
    ||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||    
T  19460565 aacagcttatttgcagcttatagcacaaatgcttatcatgataagcacttatgtataa 19460508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 418
Target Start/End: Complemental strand, 7319209 - 7319139
Alignment:
Q  350 gtttgacttaacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagctt 418  Q
    |||||| | |||||||||||| |||||||  ||||||| |||||||||||||| |||||||| ||||||||    
T  7319209 gtttgaataaacagcttatttacagcttatagcacaagcgcttatcatgataagcacttatgcataagctt 7319139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 39105360 - 39105415
Alignment:
Q  364 cttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    |||||||||||||||  ||| |||||||||||||||||| | ||||||||||||||    
T  39105360 cttatttgcagcttatagcataagtgcttatcatgataagcgcttatgtataagct 39105415  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 414
Target Start/End: Original strand, 12425450 - 12425519
Alignment:
Q  347 cctgtttgacttaacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataa 414  Q
    ||||||||  |||||| |||||||||||||||  | ||||||| |||||||||||| | |||||||||||    
T  12425450 cctgtttgtgttaacatcttatttgcagcttatagtacaagtgtttatcatgataaacgcttatgtataa 12425519  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 10639835 - 10639892
Alignment:
Q  359 aacagcttatttgcagctta-gcacaagtgcttatcatgataatcacttatgtataag 415  Q
    ||||||||||||||| |||| ||| ||||| |||||| ||||| ||||||||||||||    
T  10639835 aacagcttatttgcaacttaagcaaaagtggttatcacgataagcacttatgtataag 10639892  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 417
Target Start/End: Complemental strand, 10772049 - 10771997
Alignment:
Q  367 atttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    ||||||||||||  ||| |||||||||||||||||| ||| ||||||||||||    
T  10772049 atttgcagcttatagcataagtgcttatcatgataaacacatatgtataagct 10771997  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 42646556 - 42646597
Alignment:
Q  377 tagcacaagtgcttatcatgataatcacttatgtataagctt 418  Q
    |||||||||||||||||||||||| | ||||| |||||||||    
T  42646556 tagcacaagtgcttatcatgataagcgcttatatataagctt 42646597  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 447
Target Start/End: Original strand, 37473265 - 37473370
Alignment:
Q  344 gggcctgtttgacttaacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgcgtacgctgttattatagaaaa 441  Q
    |||||||||||  | |||| |||||||||||||||  |||||||| |||||||||| || ||||||||||||||||| | || ||| || |||||| |||    
T  37473265 gggcctgtttggataaacaacttatttgcagcttattgcacaagttcttatcatgacaagcacttatgtataagcttacataagctatttttatagcaaa 37473364  T
Q  442 agataa 447  Q
     |||||    
T  37473365 tgataa 37473370  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 5894342 - 5894282
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    ||||||||||||| ||||||  |||||||||||||||||||||| | ||||||||||||||    
T  5894342 aacagcttatttgaagcttatagcacaagtgcttatcatgataagcgcttatgtataagct 5894282  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 14331670 - 14331730
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    ||||||||||||| ||||||  ||||||| |||| ||||||||| ||||||||||||||||    
T  14331670 aacagcttatttgaagcttatagcacaagcgcttctcatgataagcacttatgtataagct 14331730  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 47499022 - 47498962
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    |||| |||||||||||||||  |||||||||||||||||||||| | ||| ||||||||||    
T  47499022 aacaacttatttgcagcttatagcacaagtgcttatcatgataagcgcttgtgtataagct 47498962  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 33541897 - 33541835
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttg 419  Q
    |||| ||||||||||| |||  ||||||||| |||||||||||| | ||||||||||||||||    
T  33541897 aacaacttatttgcagtttatagcacaagtgtttatcatgataagcgcttatgtataagcttg 33541835  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 41195378 - 41195325
Alignment:
Q  364 cttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataag 415  Q
    |||||||||||||||  ||||||| ||||||| |||||||| ||||||||||||    
T  41195378 cttatttgcagcttatagcacaagcgcttatcctgataatcgcttatgtataag 41195325  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 1510498 - 1510435
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgc 420  Q
    ||||||||||||| | ||||  ||||||| ||||||| |||||| ||||||| |||||||||||    
T  1510498 aacagcttatttgtatcttatagcacaagcgcttatcttgataagcacttatatataagcttgc 1510435  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 33546656 - 33546597
Alignment:
Q  342 ttgggcctgtttgacttaacagcttatttgcagctt--agcacaagtgcttatcatgata 399  Q
    |||||||||||||  | ||||||||||| |||||||  |||||||||| |||||||||||    
T  33546656 ttgggcctgtttggataaacagcttattcgcagcttaaagcacaagtgtttatcatgata 33546597  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 417
Target Start/End: Original strand, 38247320 - 38247394
Alignment:
Q  344 gggcctgtttgacttaacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    |||||||||||  | ||||||| ||||||||||||  |||||||  ||||||||||||  ||||||||||||||||    
T  38247320 gggcctgtttggataaacagct-atttgcagcttatagcacaagcacttatcatgatatgcacttatgtataagct 38247394  T

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Target: scaffold0012 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 207747 - 207707
Alignment:
Q  380 cacaagtgcttatcatgataatcacttatgtataagcttgc 420  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  207747 cacaagtgcttatcatgataagcacttatgtataagcttgc 207707  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 31851343 - 31851395
Alignment:
Q  365 ttatttgcagcttagcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    |||||||||||||| ||||||||||||||||||||| || ||||||| |||||    
T  31851343 ttatttgcagcttatcacaagtgcttatcatgataagcatttatgtagaagct 31851395  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 400
Target Start/End: Complemental strand, 53294274 - 53294236
Alignment:
Q  362 agcttatttgcagcttagcacaagtgcttatcatgataa 400  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  53294274 agcttatttgcagcttagcacaagcgcttatcatgataa 53294236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 35572006 - 35571951
Alignment:
Q  364 cttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    |||||||||||||||  ||||||||| ||||||||| || ||||||||||||||||    
T  35572006 cttatttgcagcttatagcacaagtggttatcatgacaagcacttatgtataagct 35571951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 43505871 - 43505927
Alignment:
Q  391 atcatgataatcacttatgtataagcttgcgtacgctgttattatagaaaaagataa 447  Q
    |||||||||| ||||||||||||||||||| || ||| || |||||| |||||||||    
T  43505871 atcatgataagcacttatgtataagcttgcataagctatttttatagcaaaagataa 43505927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 41336662 - 41336722
Alignment:
Q  377 tagcacaagtgcttatcatgataatcacttatgtataagcttgcgtacgctgttattatag 437  Q
    |||||||||| ||||| ||||||| |||||||||||| |||||| || ||| || ||||||    
T  41336662 tagcacaagttcttattatgataagcacttatgtataggcttgcataagctatttttatag 41336722  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 420
Target Start/End: Original strand, 18076083 - 18076140
Alignment:
Q  365 ttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgc 420  Q
    ||||||||||||||  ||||||| ||||||||| |||| |||||||||||||||||||    
T  18076083 ttatttgcagcttatagcacaagcgcttatcataataagcacttatgtataagcttgc 18076140  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 34430597 - 34430658
Alignment:
Q  359 aacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagctt 418  Q
    |||| |||||||||||||||  |||||||||||||||||||||  | |||||||||||||||    
T  34430597 aacatcttatttgcagcttatagcacaagtgcttatcatgataggcgcttatgtataagctt 34430658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 264250 - 264322
Alignment:
Q  347 cctgtttgacttaacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagct 417  Q
    ||||||||  ||||||||| ||||||||||||  ||||||||||||||||||||||   ||||| ||||||||    
T  264250 cctgtttggattaacagctaatttgcagcttatagcacaagtgcttatcatgataagtgcttatatataagct 264322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 420
Target Start/End: Original strand, 6538382 - 6538461
Alignment:
Q  343 tgggcctgtttgacttaacagcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtataagcttgc 420  Q
    ||||||||||||  | || |||||||||||||||||  |||||||  ||||| ||||||| | |||||||||||||||||    
T  6538382 tgggcctgtttggataaatagcttatttgcagcttatagcacaagcacttataatgataagcgcttatgtataagcttgc 6538461  T

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Target: scaffold0221 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 2689 - 2741
Alignment:
Q  362 agcttatttgcagctta--gcacaagtgcttatcatgataatcacttatgtat 412  Q
    |||||||||||||||||  ||| | ||| ||||||||||||||||||||||||    
T  2689 agcttatttgcagcttacagcatacgtggttatcatgataatcacttatgtat 2741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 58485 - 58540
Alignment:
Q  359 aacagcttatttgcagcttag--cacaagtgcttatcatgataatcacttatgtat 412  Q
    |||| ||||||||||||||||  ||||||||||| |||| |||| |||||||||||    
T  58485 aacaacttatttgcagcttagagcacaagtgcttgtcataataagcacttatgtat 58540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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