View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_53 (Length: 443)
Name: NF1139_low_53
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 236 - 433
Target Start/End: Complemental strand, 83660 - 83463
Alignment:
| Q |
236 |
gttaggtgttaagctattgttgaggctgtgtgtctaagatgtgtttgtgtctcggctgtatttggtgcatggccaagctgattagaaacaatattttaac |
335 |
Q |
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| T |
83660 |
gttaggtgttaagctattgttgaggctgtgtgtctaagatgtgtttgtgtctcggctgtatttgttgcatggccaagctgattagaaacaatattttaac |
83561 |
T |
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| Q |
336 |
tggacacccggttaagagtgtttgacacgtcatacaagttccaaacatgtttattcaaaaaagagaagtgcccatgcttgataggttgattgtctctg |
433 |
Q |
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| T |
83560 |
tggacacccggttaagagtgtttgacacgtcatacaagttccaaacatgtttattcaaaaaagagaagtgcccatgcttgataggttgattgtctctg |
83463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 83815 - 83724
Alignment:
| Q |
82 |
acaaaggatgaatagaggaagaacaaaaatttgaatgaagtatgctggatacctttaatatcatccttgaaatgttaactatgtttacaatc |
173 |
Q |
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| T |
83815 |
acaaaggatgaatagaggaagaactaaaatttgaatgaagtatgctggatacctttaatatcatccttgaaatgttaactatgttcacaatc |
83724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 84205 - 84150
Alignment:
| Q |
30 |
atatgatgagtgaaacatccccccatgtatgttttccctttttctaactggcacaa |
85 |
Q |
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| T |
84205 |
atatgatgagtgaaacatccccccatgtatgttttccctttttctaacttgcacaa |
84150 |
T |
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