View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_54 (Length: 443)
Name: NF1139_low_54
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 73 - 282
Target Start/End: Original strand, 9431573 - 9431782
Alignment:
| Q |
73 |
tctaagagatttaacgttattgcatgttcaaaatgagaattaaactgaaaccttagaaaagatatgtataatatgatctaaatgttacgggattgtgatt |
172 |
Q |
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| T |
9431573 |
tctaagagatttaacgttattacatgttcaaaatgagaattaaactgaaaccttagaaaagatatgtataatatgatctaaatgttacgggattgtgatt |
9431672 |
T |
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| Q |
173 |
gaatgtattagaaaagnnnnnnnnnncttaaaccctgattaaattagaagagatacatctacgctctttagattttggtgtatggataatatatcggata |
272 |
Q |
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| T |
9431673 |
gaatgtattagaaagaaaaaaaaaaacttaaaccctgattaaattagaagagatacatctacgctctttatattttggtgtatggataatatatcggata |
9431772 |
T |
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| Q |
273 |
tgtccctgga |
282 |
Q |
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| T |
9431773 |
tgtccctgga |
9431782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 108 - 319
Target Start/End: Original strand, 9452545 - 9452747
Alignment:
| Q |
108 |
agaattaaactgaaaccttagaaaagatatgtataatatgatctaaatgttacgggattgtgattgaatgtattagaaaagnnnnnnnnnncttaaaccc |
207 |
Q |
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| T |
9452545 |
agaattaaactaaaaccttagaagagatacatgtaatatcatctaaatgttattggattgtgattgaatgtattaggaaa-------aaaacttaaacct |
9452637 |
T |
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| Q |
208 |
tgattaaattagaagagatacatctacgctctttagattttggtgtatggataatatatcggatatgtccctggaataacctcaccaagcatagtagatc |
307 |
Q |
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| T |
9452638 |
taattaaattagaagagatacgtctacactttttagactttggtatatggataatatatcggaca--tcccttgaataacctcatcaagcatggacgatc |
9452735 |
T |
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| Q |
308 |
acaatgatatac |
319 |
Q |
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| T |
9452736 |
acaatgacatac |
9452747 |
T |
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