View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_56 (Length: 435)
Name: NF1139_low_56
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 78 - 407
Target Start/End: Complemental strand, 44184665 - 44184336
Alignment:
| Q |
78 |
atctccaacaatataactgtgttagcaggacactatgccaaatggtcaaaagaacttgcttggttactgctattaaataatctgtttggtttctgtcata |
177 |
Q |
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| T |
44184665 |
atcttcaacaatataactgtgttagcaggacactatgccaaatggtcaaaagaacttgcttggttactgctattaaataatctgtttggtttctgtcata |
44184566 |
T |
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| Q |
178 |
gcagctaactaagaaactttcttatttggaagtcaagattttaatattggtctttttaatgtaaacattggtatgtggatgtcaatttaacactagagac |
277 |
Q |
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| T |
44184565 |
gcagctaactaagaaactttcttatttggaagtcaagattttaatattggtctttttaatgtaaacattggtatgtggatgtcaatttaacactagagac |
44184466 |
T |
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| Q |
278 |
cgtttcagactttcttcctataaagggggcaactaaatgatatttatttaggggattggtaaggatttatgtcaaaacttgtttcaggaacttgatttat |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44184465 |
cgtttcagactttcttcctataaagggggcaactaaatgatatttatttaggggattggtaaggatttatgtcaaaacttgtttcaggaacttgatttat |
44184366 |
T |
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| Q |
378 |
ttttctttaatgatttgtgacatatatgct |
407 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44184365 |
ttttctttaatgatttgtgacatatatgct |
44184336 |
T |
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