View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_57 (Length: 433)
Name: NF1139_low_57
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 34254431 - 34254043
Alignment:
| Q |
30 |
atatcattgtcgtgtgtattcaggcttgtgttggtgtcgtgccaacaagcattttcctaaattaagagggacaattcgtcctaaaagactagttcattaa |
129 |
Q |
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| T |
34254431 |
atatcattgtcgtgtgtattcaggcttgtgttggtgtcgtgccaacaagcattttcctaaattaagagggacaattcgtcctaaaagactagttcattaa |
34254332 |
T |
|
| Q |
130 |
ttttggattcctcactttaaatgcatgacaatttaattaatcttagtcattcgatcctaaatcaaaggtgaagactgtttaaagatgatttaattaaggt |
229 |
Q |
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| T |
34254331 |
ttttggattcctcactttaaatgcatgacaatttaattaatcttagtcattcgatcctaaatcaaaggtgaagactgtttaaagatgatttaattaaggt |
34254232 |
T |
|
| Q |
230 |
atcaaatcaatagctgagatcaattaatgcatgcagccgcgtatatttgtaaatgtagggaatccatatcccattaagtaatatcttcttacctgtcctc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34254231 |
atcaaatcaatagctgagatcaattaatgcatgcagccgcgtatatttgtaaatgtagggaatccatatcccattaagtaatatcttcttacttgtcctc |
34254132 |
T |
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| Q |
330 |
ttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacaggagaatcaataagaagaatgttggcaac |
418 |
Q |
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| T |
34254131 |
ttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacaggagaatcaataagaagaatgttggcaac |
34254043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 394
Target Start/End: Complemental strand, 26634250 - 26634173
Alignment:
| Q |
317 |
cttacctgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacaggaga |
394 |
Q |
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| T |
26634250 |
cttacctgtcctcttatcgccattgttgagaatgtcagatgaattctttgaatatgaaaatccaactccaacaggaga |
26634173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 318 - 418
Target Start/End: Complemental strand, 26626696 - 26626596
Alignment:
| Q |
318 |
ttacctgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacaggagaatcaataagaagaatgttggcaa |
417 |
Q |
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||||||||||||||||| |||||| ||||||| ||||| ||| |||||||| |||||||||||||| ||||| || |||||| |||||||||||||| |
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| T |
26626696 |
ttacctgtcctcttatcgccattggtgagaatgtcagatgaattctttgaataggaaaatccaactccgacaggcgagtcaatataaagaatgttggcaa |
26626597 |
T |
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| Q |
418 |
c |
418 |
Q |
| |
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| |
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| T |
26626596 |
c |
26626596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 418
Target Start/End: Complemental strand, 26641723 - 26641616
Alignment:
| Q |
317 |
cttacctgtcctcttatctccattgttgagaatatcagaagaagcatt------tgaatatgaaaatccaactccaacaggagaatcaataagaagaatg |
410 |
Q |
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|||||||||||||||||| |||||||||||||| ||| ||| | ||| |||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
26641723 |
cttacctgtcctcttatcgccattgttgagaatgtcatcagatgaattctttgttgaatatgaaaatccaactccaacaggagagtcaatataaagaata |
26641624 |
T |
|
| Q |
411 |
ttggcaac |
418 |
Q |
| |
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|||||||| |
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| T |
26641623 |
ttggcaac |
26641616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Complemental strand, 3332917 - 3332885
Alignment:
| Q |
362 |
atttgaatatgaaaatccaactccaacaggaga |
394 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
3332917 |
atttgaataagaaaatccaactccaacaggaga |
3332885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 11345689 - 11345637
Alignment:
| Q |
163 |
taattaatcttagtcattcgatcctaaatcaaaggtgaagactgtttaaagat |
215 |
Q |
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||||||||||||||||| | ||| |||||||||||| ||| ||||||||||| |
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| T |
11345689 |
taattaatcttagtcatccaatctcaaatcaaaggtgtagattgtttaaagat |
11345637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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