View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_6 (Length: 710)

Name: NF1139_low_6
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_6
NF1139_low_6
[»] chr1 (1 HSPs)
chr1 (30-697)||(36513480-36514145)


Alignment Details
Target: chr1 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 30 - 697
Target Start/End: Complemental strand, 36514145 - 36513480
Alignment:
Q  30 gaaagcaacatgatgataggtgttattagtcacctgaaccgtacacgaactttgtttctttaattcaactacaataaacaaaaatcacagcacattattc 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36514145 gaaagcaacatgatgataggtgttattagtcacctgaaccgtacacgaactttgtttcttcaattcaactacaataaacaaaaatcacagcacattattc 36514046  T
Q  130 aatggatcatgcgttgaacacacattacaagcatttgaaattgaaaattttcactcacatatgaatttgagttcccttggttcaatttcgagaatcggtg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36514045 aatggatcatgcgttgaacacacattacaagcatttgaaattgaaaattttcactcacatatgaatttgagttcccttggttcaatttcgagaatcggtg 36513946  T
Q  230 ttttgttcatgattacagtaactaaaatcgagatccacggttaaaacgacggtgttttggtgaagtcgttggattcgnnnnnnnnnnnnnnnnnnnnncg 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||    
T  36513945 ttttgttcatgattacagtaactaaaatcgagatccacggttaaaacgacggtgttttggtgaagtcgttggattcgagaagaagaagagaagaa---cg 36513849  T
Q  330 agtcaactcaagtgaactcgttgtgtgtttaaattggaagaaattgatatgagctatttttgaggagaaaagatgtgaatgaataaaaatactaaaaaac 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36513848 agtcaactcaagtgaactcgttgtgtgtttaaattggaagaaattgatatgagctatttttgaggagaaaagatgtgaatgaataaaaatactaaaaaac 36513749  T
Q  430 ggaatca-gtgaataaggtagttggagatttattttccctttttatttgatgctatgattgacacattgaatgagaataagcgtgtgaatcgtgaagtta 528  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36513748 ggaatcaagtgaataaggtagttggagatttattttccctttttatttgatgctatgattgacacattgaatgagaataagcgtgtgaatcgtgaagtta 36513649  T
Q  529 gtgaaagaaaatgtagaaattgtgaataaaaatataaatttatggtaaaacgcatttttcaattttgaagtgaagaagagcatgtagtatctcaagggaa 628  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36513648 gtgaaacaaaatgtaaaaattgtgaataaaaatataaatttatggtaaaacgcatttttcaattttgaagtgaagaagagcatgtagtatctcaagggaa 36513549  T
Q  629 agcgacctatatgattgtactgcctttttaccgacagttagccgacccggttttctttgcttactcttc 697  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36513548 agtgacctatatgattgtactgcctttttaccgacagttagccgacccggttttctttgcttactcttc 36513480  T

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