View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_60 (Length: 431)
Name: NF1139_low_60
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_60 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 423
Target Start/End: Complemental strand, 36604568 - 36604174
Alignment:
| Q |
29 |
atatgtatgcatatacgtgtaattcctcttaatgctagcttctcgtattcatgtttatttccaagatgcttcgtggaagctgcttctgcttagtttaaag |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
36604568 |
atatgtatgcatatacgtgtaattcctcttaatgctagcttctcgtattcatgtttatttccaagatgcttcgtggaagctgctgctacttagtttaaag |
36604469 |
T |
|
| Q |
129 |
tataccaccaatttatacgtcagaattcctacctcttcatagttactacnnnnnnnnnnnnnnnnnncctcaccttttgcaattatcacatatattcatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36604468 |
tataccaccaatttatacgtcagaattcctacctcttcatagttactactatatataaatatatatacctcaccttttgcaattatcacatatattcatt |
36604369 |
T |
|
| Q |
229 |
gtcctactttccctttctgtctttaacaatatacattccccttaaagattgtatgttgctaaagagagacaatactaaaagctctgttccaaaattttgt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36604368 |
gtcctactttccctttctgtctttaacaatatacattccccttaaagattgtttgttgctaaagagagacaatactaaaagctctgttccaaaattttgt |
36604269 |
T |
|
| Q |
329 |
ttatactactagctatagcataactcctaccacatacccaacttcattccaaaatttacatggagcctcagcctcctcataccagcacctatgct |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36604268 |
ttatactactagctatagcataactcctaccacatacccagcttcattccaaaatttacatggagcctcagcctcctcataccagcaccaatgct |
36604174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University