View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_62 (Length: 429)
Name: NF1139_low_62
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 8361896 - 8362059
Alignment:
| Q |
35 |
aggaaagaaaagggttgaagacattgttaccttgtcatgattaatggtaatatatgacactaaaacactaactattacacgaatcccaatcttttcaact |
134 |
Q |
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| T |
8361896 |
aggaaagaaaaggattgaagacattgttatcttgtcatgattaatggtaatatatgacactaaaacactaactattacatgaatcccaatcttttcaact |
8361995 |
T |
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| Q |
135 |
acatttttctattccttactcgcccattaacttccttcaatttcaaactttctattaacatgac |
198 |
Q |
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| T |
8361996 |
acatttttctattccttactcgcccattaacttccttcaatttcaaactttctattaacatgac |
8362059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 268 - 401
Target Start/End: Original strand, 8362146 - 8362280
Alignment:
| Q |
268 |
gtcttaataatgtcactagactcataataatatcttacgttttcattttagcttgttc-nnnnnnnnnnnnnnntatcttacgttttcattttcgtttat |
366 |
Q |
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| T |
8362146 |
gtcttaataatgtcactagactcataataatatcttacgttttcattttggtttgttcaaaaaaaataaaaaaatatcttacgttttcattttcgtttat |
8362245 |
T |
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| Q |
367 |
gaatccatgtggcattggaacttgagcatacatgt |
401 |
Q |
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| T |
8362246 |
ggatccatgtgacattggaatttcaacatacatgt |
8362280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 8371338 - 8371398
Alignment:
| Q |
341 |
tatcttacgttttcattttcgtttatgaatccatgtggcattggaacttgagcatacatgt |
401 |
Q |
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| T |
8371338 |
tatcttacgttttcattttcgctcatggatccatgtggcattggaacttcagcatacatgt |
8371398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 8361837 - 8361876
Alignment:
| Q |
8 |
caccacagaaccaagttacttgcagttaggaaagaaaagg |
47 |
Q |
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| T |
8361837 |
caccacagaaccaagttacttgcagttaggaaagaaaagg |
8361876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 8369938 - 8369998
Alignment:
| Q |
341 |
tatcttacgttttcattttcgtttatgaatccatgtggcattggaacttgagcatacatgt |
401 |
Q |
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| T |
8369938 |
tatcttacgttttcattttcgtccatggatccatgtgacattggaacttcatcatacatgt |
8369998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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