View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_65 (Length: 422)

Name: NF1139_low_65
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_65
NF1139_low_65
[»] chr8 (5 HSPs)
chr8 (1-287)||(23895985-23896269)
chr8 (347-407)||(23896309-23896370)
chr8 (346-388)||(19778085-19778127)
chr8 (350-388)||(30623313-30623351)
chr8 (344-386)||(38763512-38763554)
[»] chr5 (9 HSPs)
chr5 (344-388)||(34702510-34702554)
chr5 (345-388)||(11647217-11647260)
chr5 (347-386)||(10199041-10199080)
chr5 (347-390)||(26590725-26590768)
chr5 (350-388)||(23118054-23118092)
chr5 (353-386)||(33014250-33014283)
chr5 (347-388)||(36683470-36683511)
chr5 (348-388)||(11844439-11844479)
chr5 (338-382)||(18872693-18872737)
[»] chr4 (10 HSPs)
chr4 (345-390)||(14542758-14542803)
chr4 (347-388)||(56497608-56497649)
chr4 (349-388)||(45029607-45029646)
chr4 (350-389)||(49308839-49308878)
chr4 (350-388)||(1657033-1657071)
chr4 (348-386)||(12698619-12698657)
chr4 (350-388)||(29808271-29808309)
chr4 (350-387)||(47806259-47806296)
chr4 (349-385)||(10006363-10006399)
chr4 (349-385)||(21266884-21266920)
[»] scaffold0066 (1 HSPs)
scaffold0066 (347-386)||(17526-17565)
[»] chr6 (5 HSPs)
chr6 (350-389)||(9333983-9334022)
chr6 (347-388)||(10497152-10497193)
chr6 (347-388)||(14679145-14679186)
chr6 (350-390)||(12808887-12808927)
chr6 (350-390)||(28592690-28592730)
[»] chr3 (14 HSPs)
chr3 (347-386)||(53996321-53996360)
chr3 (350-384)||(19939044-19939078)
chr3 (350-388)||(21914074-21914112)
chr3 (350-388)||(25505704-25505742)
chr3 (344-390)||(28879890-28879936)
chr3 (350-388)||(35191820-35191858)
chr3 (350-388)||(54230102-54230140)
chr3 (347-388)||(17588382-17588423)
chr3 (347-388)||(21513308-21513349)
chr3 (350-387)||(26610496-26610533)
chr3 (347-388)||(28130934-28130975)
chr3 (344-388)||(1149066-1149110)
chr3 (350-386)||(13829080-13829116)
chr3 (348-388)||(45254251-45254291)
[»] chr2 (4 HSPs)
chr2 (347-386)||(29809348-29809387)
chr2 (347-384)||(6579281-6579318)
chr2 (350-386)||(2256993-2257029)
chr2 (344-388)||(2264817-2264861)
[»] chr7 (3 HSPs)
chr7 (350-388)||(6384871-6384909)
chr7 (350-388)||(7872751-7872789)
chr7 (348-388)||(2618699-2618739)
[»] chr1 (6 HSPs)
chr1 (350-388)||(10132447-10132485)
chr1 (347-388)||(38448866-38448907)
chr1 (348-388)||(6809800-6809840)
chr1 (350-390)||(29987115-29987155)
chr1 (346-382)||(34485903-34485939)
chr1 (348-388)||(40613043-40613083)
[»] scaffold0026 (1 HSPs)
scaffold0026 (347-388)||(75345-75386)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 23895985 - 23896269
Alignment:
Q  1 cactagttaagaccctaggttaaaaaacaatcataccttctcatacacatggtgagcgaacgaaatgatgatggtttactcaattattttactccctcgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23895985 cactagttaagaccctaggttaaaaaacaatcataccttctcatacacatggtgagcgaacgaaatgatgatggcttactcaattattttactccctcgt 23896084  T
Q  101 gtggctttgtccccaatccttctcttctatccannnnnnnnnnncaaactcatgtgggagaagtcatcattcactactttgtgtcttcaagtcggcttgt 200  Q
    |||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23896085 gtggctttgtccccaatccttctcttctatccatttttttttt-caaactcatgtgggagaagtcatcattcactactttgtgtcttca-gtcggcttgt 23896182  T
Q  201 catacatgcctaccttacttactttttatcggtttcctggtatgcacacctcaagcttacaacactatgacttcatactttttaata 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23896183 catacatgcctaccttacttactttttatcggtttcctggtatgcacacctcaagcttacaacactatgacttcatactttttaata 23896269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 23896309 - 23896370
Alignment:
Q  347 ggattcgaacccc-acacctttcatatattatgcattgtccttgcatatataattgatgatg 407  Q
    ||||||||||||| | || |||||||||||||||||||||||||||||||| ||||||||||    
T  23896309 ggattcgaacccccagacttttcatatattatgcattgtccttgcatatattattgatgatg 23896370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 19778127 - 19778085
Alignment:
Q  346 aggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||||||  ||||| |||||||||||||||||||||    
T  19778127 aggattcgaaccccggaccttgcatatattatgcattgtcctt 19778085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 30623351 - 30623313
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  30623351 ttcgaaccccagaccttgcatatattatgcattgtcctt 30623313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 38763512 - 38763554
Alignment:
Q  344 ccaggattcgaaccccacacctttcatatattatgcattgtcc 386  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||    
T  38763512 ccagggttcgaaccccagaccttgcatatattatgcattgtcc 38763554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 34702554 - 34702510
Alignment:
Q  344 ccaggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||||||||  |||||||||||||||||||||||||||    
T  34702554 ccaggattcgaaccccggacctttcatatattatgcattgtcctt 34702510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 11647260 - 11647217
Alignment:
Q  345 caggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  11647260 caggattcgaaccccaaaccttgcatatattatgcattgtcctt 11647217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 10199080 - 10199041
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcc 386  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  10199080 ggattcgaaccccacaccttatatatattatgcattgtcc 10199041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 26590768 - 26590725
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtccttgc 390  Q
    |||||| ||||||| ||||| |||||||||||||||||||||||    
T  26590768 ggattcaaaccccagaccttgcatatattatgcattgtccttgc 26590725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 23118054 - 23118092
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  23118054 ttcgaaccccaaaccttacatatattatgcattgtcctt 23118092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 386
Target Start/End: Original strand, 33014250 - 33014283
Alignment:
Q  353 gaaccccacacctttcatatattatgcattgtcc 386  Q
    |||||||| |||||||||||||||||||||||||    
T  33014250 gaaccccagacctttcatatattatgcattgtcc 33014283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 36683470 - 36683511
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    |||||||||||||| | ||| |||||||||||||||||||||    
T  36683470 ggattcgaaccccatatcttgcatatattatgcattgtcctt 36683511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 11844439 - 11844479
Alignment:
Q  348 gattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  11844439 gattcgaaccctaaaccttgcatatattatgcattgtcctt 11844479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 18872737 - 18872693
Alignment:
Q  338 tggtaaccaggattcgaaccccacacctttcatatattatgcatt 382  Q
    |||| |||||||||||||||||  ||||| |||||||||||||||    
T  18872737 tggtgaccaggattcgaaccccgaaccttgcatatattatgcatt 18872693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 14542758 - 14542803
Alignment:
Q  345 caggattcgaaccccacacctttcatatattatgcattgtccttgc 390  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||    
T  14542758 cagggttcgaaccccagaccttgcatatattatgcattgtccttgc 14542803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 56497608 - 56497649
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  56497608 ggattcgaaccccagaccttgcatatattatgcattgtcctt 56497649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 45029607 - 45029646
Alignment:
Q  349 attcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  45029607 attcgaaccccaaaccttacatatattatgcattgtcctt 45029646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 389
Target Start/End: Complemental strand, 49308878 - 49308839
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtccttg 389  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  49308878 ttcgaaccccagaccttgcatatattatgcattgtccttg 49308839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 1657033 - 1657071
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  1657033 ttcgaaccccaaaccttacatatattatgcattgtcctt 1657071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 12698657 - 12698619
Alignment:
Q  348 gattcgaaccccacacctttcatatattatgcattgtcc 386  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  12698657 gattcgaaccccagaccttgcatatattatgcattgtcc 12698619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 29808271 - 29808309
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  29808271 ttcgaaccccataccttgcatatattatgcattgtcctt 29808309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 47806259 - 47806296
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcct 387  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  47806259 ttcgaaccccagaccttgcatatattatgcattgtcct 47806296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 10006399 - 10006363
Alignment:
Q  349 attcgaaccccacacctttcatatattatgcattgtc 385  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  10006399 attcgaaccccagaccttgcatatattatgcattgtc 10006363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 21266884 - 21266920
Alignment:
Q  349 attcgaaccccacacctttcatatattatgcattgtc 385  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  21266884 attcgaaccccaaaccttacatatattatgcattgtc 21266920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 17565 - 17526
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcc 386  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  17565 ggattcgaaccccaaaccttgcatatattatgcattgtcc 17526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 389
Target Start/End: Original strand, 9333983 - 9334022
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtccttg 389  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  9333983 ttcgaaccccaaaccttacatatattatgcattgtccttg 9334022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 10497152 - 10497193
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| || ||||| |||||||||||||||||||||    
T  10497152 ggattcgaaccgcaaaccttacatatattatgcattgtcctt 10497193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 14679186 - 14679145
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||| |||| ||||| |||||||||||||||||||||    
T  14679186 ggattcgaaacccaaaccttgcatatattatgcattgtcctt 14679145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 12808927 - 12808887
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtccttgc 390  Q
    ||||||||||| ||||| ||||||||||||||||| |||||    
T  12808927 ttcgaaccccagaccttgcatatattatgcattgttcttgc 12808887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 28592690 - 28592730
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtccttgc 390  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  28592690 ttcgaaccccagaccttacatatattatgcattgtctttgc 28592730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 53996360 - 53996321
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcc 386  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  53996360 ggattcgaaccccagaccttgcatatattatgcattgtcc 53996321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 19939044 - 19939078
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgt 384  Q
    ||||||||||| |||||||||||||||||||||||    
T  19939044 ttcgaaccccagacctttcatatattatgcattgt 19939078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 21914074 - 21914112
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  21914074 ttcgaaccccataccttgcatatattatgcattgtcctt 21914112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 25505704 - 25505742
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  25505704 ttcgaaccccagaccttgcatatattatgcattgtcctt 25505742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 28879890 - 28879936
Alignment:
Q  344 ccaggattcgaaccccacacctttcatatattatgcattgtccttgc 390  Q
    |||||||||||||| || ||||| | |||||||||||||||||||||    
T  28879890 ccaggattcgaaccacagaccttgcgtatattatgcattgtccttgc 28879936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 35191820 - 35191858
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  35191820 ttcgaaccccagaccttgcatatattatgcattgtcctt 35191858  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 54230102 - 54230140
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  54230102 ttcgaaccccaaaccttgcatatattatgcattgtcctt 54230140  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 17588423 - 17588382
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    |||||||||||||| | ||| |||||||||||||||||||||    
T  17588423 ggattcgaaccccagatcttgcatatattatgcattgtcctt 17588382  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 21513349 - 21513308
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    |||||||||||||| ||||| |||| ||||||||||||||||    
T  21513349 ggattcgaaccccagaccttgcataaattatgcattgtcctt 21513308  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 26610496 - 26610533
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcct 387  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  26610496 ttcgaaccccataccttacatatattatgcattgtcct 26610533  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 28130934 - 28130975
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    |||||| ||||||| ||||| |||||||||||||||||||||    
T  28130934 ggattcaaaccccagaccttgcatatattatgcattgtcctt 28130975  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 1149066 - 1149110
Alignment:
Q  344 ccaggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||| ||||||||| | ||||| |||||||||||||||||||||    
T  1149066 ccagggttcgaaccctagaccttgcatatattatgcattgtcctt 1149110  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 13829080 - 13829116
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcc 386  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  13829080 ttcgaaccccagaccttgcatatattatgcattgtcc 13829116  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 45254291 - 45254251
Alignment:
Q  348 gattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||| ||| ||||| |||||||||||||||||||||    
T  45254291 gattcgaactccaaaccttacatatattatgcattgtcctt 45254251  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 29809387 - 29809348
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcc 386  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  29809387 ggattcgaaccccgtacctttcatatattatgcattgtcc 29809348  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 6579281 - 6579318
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgt 384  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  6579281 ggattcgaaccccagaccttgcatatattatgcattgt 6579318  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 2257029 - 2256993
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcc 386  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  2257029 ttcgaaccccagaccttgcatatattatgcattgtcc 2256993  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 2264861 - 2264817
Alignment:
Q  344 ccaggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||| ||||||||||| ||||| ||||||||||||||| |||||    
T  2264861 ccagggttcgaaccccaaaccttacatatattatgcattttcctt 2264817  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 6384909 - 6384871
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  6384909 ttcgaaccccagaccttgcatatattatgcattgtcctt 6384871  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 7872751 - 7872789
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  7872751 ttcgaaccccagaccttgcatatattatgcattgtcctt 7872789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 2618739 - 2618699
Alignment:
Q  348 gattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||||  ||||| |||||||||||||||||||||    
T  2618739 gattcgaaccccggaccttgcatatattatgcattgtcctt 2618699  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 10132447 - 10132485
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  10132447 ttcgaaccccagaccttgcatatattatgcattgtcctt 10132485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 38448866 - 38448907
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    |||||||||||||  ||||| |||||||||||||||||||||    
T  38448866 ggattcgaaccccggaccttgcatatattatgcattgtcctt 38448907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 6809800 - 6809840
Alignment:
Q  348 gattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||||| || || |||||||||||||||||||||    
T  6809800 gattcgaaccccagacattgcatatattatgcattgtcctt 6809840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 29987115 - 29987155
Alignment:
Q  350 ttcgaaccccacacctttcatatattatgcattgtccttgc 390  Q
    ||||||| ||| ||||| |||||||||||||||||||||||    
T  29987115 ttcgaactccagaccttgcatatattatgcattgtccttgc 29987155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 382
Target Start/End: Complemental strand, 34485939 - 34485903
Alignment:
Q  346 aggattcgaaccccacacctttcatatattatgcatt 382  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  34485939 aggattcgaaccccagaccttacatatattatgcatt 34485903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 40613083 - 40613043
Alignment:
Q  348 gattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    ||||||||||||  ||||| |||||||||||||||||||||    
T  40613083 gattcgaaccccggaccttgcatatattatgcattgtcctt 40613043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 75386 - 75345
Alignment:
Q  347 ggattcgaaccccacacctttcatatattatgcattgtcctt 388  Q
    |||||||||||||  ||||| |||||||||||||||||||||    
T  75386 ggattcgaaccccggaccttgcatatattatgcattgtcctt 75345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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