View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_69 (Length: 415)
Name: NF1139_low_69
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_69 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 103 - 415
Target Start/End: Original strand, 36332006 - 36332318
Alignment:
| Q |
103 |
acaataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttcttttcagtactttgtgtttggtatagctgatatgtt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36332006 |
acaataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttcttttcagtactttgtgtttggtatagctgatatgtt |
36332105 |
T |
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| Q |
203 |
tacctatgtgggacttcttgagttcttctattcagaggcaccaaaagggcttaaatctacatcaacatgcttcctttggagctctatggcacttggctat |
302 |
Q |
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| T |
36332106 |
tacctatgtgggacttcttgagttcttctattcagaggcaccaaaagggcttaaatctacatcaacatgcttcctttggagctctatggcacttggctat |
36332205 |
T |
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| Q |
303 |
tttctaagcagcattatggtgcaaattgtgaatagtgctaccaagaatgttactgcaagtggtggatggttagcagggaacaatattaacagaaaccatt |
402 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36332206 |
tttctaagcagcattatggtgcaaattgtgaataatgctaccaagaatgttactgcaagtggtggatggttggcagggaacaatattaacagaaaccatt |
36332305 |
T |
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| Q |
403 |
tgaacctattcta |
415 |
Q |
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||||||| ||||| |
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| T |
36332306 |
tgaaccttttcta |
36332318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 105 - 415
Target Start/End: Original strand, 36324747 - 36325057
Alignment:
| Q |
105 |
aataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttcttttcagtactttgtgtttggtatagctgatatgttta |
204 |
Q |
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| T |
36324747 |
aataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttcttttcagtactttgtatttggtatagctgatatgttta |
36324846 |
T |
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| Q |
205 |
cctatgtgggacttcttgagttcttctattcagaggcaccaaaagggcttaaatctacatcaacatgcttcctttggagctctatggcacttggctattt |
304 |
Q |
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| T |
36324847 |
cctatgtgggacttcttgagttcttctattcagaagcaccaaaagggcttaaatctacttcaacatgctttctttggagctctatggcacttggctattt |
36324946 |
T |
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| Q |
305 |
tctaagcagcattatggtgcaaattgtgaatagtgctaccaagaatgttactgcaagtggtggatggttagcagggaacaatattaacagaaaccatttg |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36324947 |
tctaagcagcattatggtgcaaattgtgaatagtgctaccaagaatgttactgcaagtggtggatggttggcagggaacaatattaacagaaaccatttg |
36325046 |
T |
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| Q |
405 |
aacctattcta |
415 |
Q |
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|| || ||||| |
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| T |
36325047 |
aatctgttcta |
36325057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 103 - 310
Target Start/End: Original strand, 5460007 - 5460214
Alignment:
| Q |
103 |
acaataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttcttttcagtactttgtgtttggtatagctgatatgtt |
202 |
Q |
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|||||||||||||||||||| | |||| | ||| ||||| ||| | || | ||||||||||||||||||||| || | ||||| |||||||| || || |
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| T |
5460007 |
acaataacatgcttgatgctttaccagtatatcagccattgcctataagcacattttggctttcttttcagtatttcatatttggcatagctgacatatt |
5460106 |
T |
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| Q |
203 |
tacctatgtgggacttcttgagttcttctattcagaggcaccaaaagggcttaaatctacatcaacatgcttcctttggagctctatggcacttggctat |
302 |
Q |
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|||||| | || || ||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || ||||||||||| ||| |
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| T |
5460107 |
cacctatattggtctccttcagtttttctattcagaggcaccaaaaggacttaaatctacatcaacttgcttcctttggacttcaatggcacttggatat |
5460206 |
T |
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| Q |
303 |
tttctaag |
310 |
Q |
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|||||||| |
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| T |
5460207 |
tttctaag |
5460214 |
T |
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