View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_7 (Length: 691)
Name: NF1139_low_7
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 82 - 662
Target Start/End: Original strand, 25296014 - 25296594
Alignment:
| Q |
82 |
ccaagaatataaaaaagaaacgcaccgaacaaatcagtgaccattcttgccggaacttctcaccggccgggaaatcggacccgcagttgttcgaaaccct |
181 |
Q |
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| T |
25296014 |
ccaagaaaataaaaaagaaacgcaccgaacaaatcagtgaccattcttgccggaacttctcaccggccgggaaatcggacccgcagttgttcgaaaccct |
25296113 |
T |
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| Q |
182 |
aaaatttccttatcaccaaagcacaaatggaaatcagcatcaatccctgtaattttctccatgaaacactctccacagataccaagtttgccttgtccta |
281 |
Q |
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| T |
25296114 |
aaaatttccttatcaccaaagcacaaatggaaatcagcatcaatccctgtaattttctccatgaaacactctccacagataccaagtttgccttgtccta |
25296213 |
T |
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| Q |
282 |
tcggtcctcttctcagcctttcaacgtattcatcacttaaagccccaggcttgaatttctgagatgggttcttgttcttcttcactgaagacttgacata |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25296214 |
tcggtcctcttctcagcctttcaacgtattcatcacttaaagccccaggcttgaatttctgagatgggttcttgttcttcttcactgaagacttgacata |
25296313 |
T |
|
| Q |
382 |
taaatagtactcgccgtgtttattatcgaattcggcaatgttgatcttgaatgagaaaggaattttccagttgctgccttgtttcgcaagaaatacagta |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25296314 |
taaatagtactcgccgtgtttattatcgaattcggcaatgttgatcttgaatgagaaaggaattttccagttgctgccttgtttcgcaagaaatacagta |
25296413 |
T |
|
| Q |
482 |
aatagatgtgccaagattttgatcttttcactgaggatgaaaagaagagtattcatatctgaggtggggtacagccttagaattccgaggttggtttcgg |
581 |
Q |
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| T |
25296414 |
aatagatgtggcaagattttgatcttttcactgaggatgaaaagaagagtattcatatctgaggtggggtacagccttagaattccgaggttggtttcgg |
25296513 |
T |
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| Q |
582 |
tttcaccgtcgctatagatgacgggaaatggcgtacttctaccgttggacataattttccgacgaatgaattggacgttag |
662 |
Q |
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| T |
25296514 |
tttcgccgtcgctatagatgacgggaaatggcgtacttctaccgttggacataattttccgaggaatgaattggacgttag |
25296594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 612
Target Start/End: Original strand, 25303724 - 25303773
Alignment:
| Q |
563 |
attccgaggttggtttcggtttcaccgtcgctatagatgacgggaaatgg |
612 |
Q |
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| T |
25303724 |
attccgaggttggtttcggtttcgccgtcgttatagacgacggggaatgg |
25303773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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