View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_71 (Length: 409)
Name: NF1139_low_71
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_71 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 409
Target Start/End: Complemental strand, 32259410 - 32259009
Alignment:
| Q |
7 |
tccaagaatataacaacccaacaattttgcaaattgtccggccagctgaccgacagcacctgatgccgccgagatgaagacgctttctcctttctttaga |
106 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32259410 |
tccaacaacataacaacccaacaattttgcaaattgtccggccagctgaccgacagcacctgatgccgccgagatgaagacactttctcctttctttaga |
32259311 |
T |
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| Q |
107 |
gaaccaacttcaaagattccggcatatgcagtaataccaggcatgcctattggattagaaagaataaaatacatcagaagctaccaaaaactgactctca |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32259310 |
gaaccaacttcaaagattccggcatatgcagtaataccaggcatgcctattggattagaaagaataaaatacatcagaaactaccaaaaactgactctca |
32259211 |
T |
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| Q |
207 |
taatagatttatcatttcttttcagcattacattcagaaaaagcataatnnnnnnntttgagaagaactcaattaccaagaattccagtgtaataggaaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32259210 |
taatagatttatcatttcttttcagcattacattcagaaaaagcataataaaaaac-ttgagaagaactcaattactaagaattccagtgtaataggaaa |
32259112 |
T |
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| Q |
307 |
gaggcacatcagtgtgatggattttgtagagtttgtctggattttgaattagactatattcttcccaactagttatcccccataccaagtcaccttcact |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32259111 |
gaggcacatcagtgtgatggattttgtagagtttgtctggattttgaattagactatattcttcccaactagttatcccccataccaagtcaccttcact |
32259012 |
T |
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| Q |
407 |
gaa |
409 |
Q |
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||| |
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| T |
32259011 |
gaa |
32259009 |
T |
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