View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_74 (Length: 404)
Name: NF1139_low_74
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_74 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 90 - 394
Target Start/End: Complemental strand, 29312495 - 29312191
Alignment:
| Q |
90 |
aaatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagac |
189 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312495 |
aaatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagac |
29312396 |
T |
|
| Q |
190 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312395 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgc |
29312296 |
T |
|
| Q |
290 |
aagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttatt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312295 |
aagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttatt |
29312196 |
T |
|
| Q |
390 |
tcatc |
394 |
Q |
| |
|
||||| |
|
|
| T |
29312195 |
tcatc |
29312191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 390
Target Start/End: Original strand, 34635303 - 34635670
Alignment:
| Q |
22 |
taatgaaatttgagttagacatgctcagataggatcagtgcgaccacttactctcaataacctgagtcaaatattcaccataaatcattacaagaacaat |
121 |
Q |
| |
|
|||| ||||||||||| || | ||||||||||||||| || |||| |||| || |||||| || ||||||||| |||||||||||||||||| ||||||| |
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| T |
34635303 |
taataaaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaatagtcaccataaatcattacatgaacaat |
34635402 |
T |
|
| Q |
122 |
tttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccaca |
221 |
Q |
| |
|
|| ||||||||||||||| |||||| |||| ||| || |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34635403 |
ttccatttttgaagtgatgaaacctgaaggagtctctgacaacaatcatcacatcaacaaccttagccatatacttaatggcattgtgacaatcaccaca |
34635502 |
T |
|
| Q |
222 |
tattctcaaattcttataaac-catatcatcgactgtccattcaaattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctca |
320 |
Q |
| |
|
|||||||||||||||| |||| | |||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| | | ||||| ||||| |
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|
| T |
34635503 |
tattctcaaattcttaaaaactcgtatcgtcgactgcccattcaaattaagtatcccaaatgcaacggcaagcttctcactatgcttacaaagactctca |
34635602 |
T |
|
| Q |
321 |
gctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttattt |
390 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||| ||||||||| |
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|
| T |
34635603 |
actttttcctcttgatcaatatcatgcagaacattatcagtgtc--gcttatatccagccgcttttattt |
34635670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 387
Target Start/End: Original strand, 29054467 - 29054828
Alignment:
| Q |
24 |
atgaaatttgagttagacatgctcagataggatcagtgcgaccacttactctcaataacctgagtcaaatattcaccataaatcattacaagaacaattt |
123 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||| || |||| |||| || |||||| |||||||||||| ||||||||| || |||||||||||| || |
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|
| T |
29054467 |
atgaaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaactt |
29054566 |
T |
|
| Q |
124 |
tcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccacata |
223 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| ||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
29054567 |
ccatttttgaagtgataaaacctcaaggagtctctaacagtaataatcacacaaacaactttagacatatactaaatggcattgtgacaatcaccacata |
29054666 |
T |
|
| Q |
224 |
ttctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctcagct |
323 |
Q |
| |
|
|||||||||| ||| ||||| || |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||| | |
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|
| T |
29054667 |
ttctcaaatttttaaaaaccgcattgtcgactgtccattcaaattaagtatcccaaatgcaacagcaagcttctcactatggttacaaagattctcagtt |
29054766 |
T |
|
| Q |
324 |
ttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccactttta |
387 |
Q |
| |
|
||||||||| || ||||||| |||||||| ||||| ||||| ||||||||| |||||||||| |
|
|
| T |
29054767 |
ttttcctct--attaatatcaccaagaacataatcagtgtcagccttatatccggccactttta |
29054828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 29312535 - 29312496
Alignment:
| Q |
22 |
taatgaaatttgagttagacatgctcagataggatcagtg |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29312535 |
taatgaaatttgagttagacatgctcagataggatcagtg |
29312496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 390
Target Start/End: Complemental strand, 4611 - 4244
Alignment:
| Q |
22 |
taatgaaatttgagttagacatgctcagataggatcagtgcgaccacttactctcaataacctgagtcaaatattcaccataaatcattacaagaacaat |
121 |
Q |
| |
|
|||| ||||||||||| || | ||||||||||||||| || |||| |||| || |||||| || ||||||||| |||||||||||||||||| ||||||| |
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|
| T |
4611 |
taataaaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaatagtcaccataaatcattacatgaacaat |
4512 |
T |
|
| Q |
122 |
tttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccaca |
221 |
Q |
| |
|
|| ||||||||||||||| |||||| |||| ||| || |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4511 |
ttccatttttgaagtgatgaaacctgaaggagtctctgacaacaatcatcacatcaacaaccttagccatatacttaatggcattgtgacaatcaccaca |
4412 |
T |
|
| Q |
222 |
tattctcaaattcttataaac-catatcatcgactgtccattcaaattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctca |
320 |
Q |
| |
|
|||||||||||||||| |||| | |||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| | | ||||| ||||| |
|
|
| T |
4411 |
tattctcaaattcttaaaaactcgtatcgtcgactgcccattcaaattaagtatcccaaatgcaacggcaagcttctcactatgcttacaaagactctca |
4312 |
T |
|
| Q |
321 |
gctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttattt |
390 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
4311 |
actttttcctcttgatcaatatcatgcagaacattatcagtgtc--gcttatatccagccgcttttattt |
4244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 390
Target Start/End: Complemental strand, 28744048 - 28743679
Alignment:
| Q |
22 |
taatgaaatttgagttagacatgctcagataggatcagtgcgaccacttactctcaataacctgagtcaaatattcaccataaatcattacaagaacaat |
121 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| | | |||||||| || |||||| |||| ||||||| ||||||||| || ||||||||||||| |
|
|
| T |
28744048 |
taatcaaatttgagttagacaaactcagataggattatcgtcaccacttaatcccaataatctgattcaaataatcaccataagtctttacaagaacaat |
28743949 |
T |
|
| Q |
122 |
tttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccaca |
221 |
Q |
| |
|
|| ||||||||||||||| ||||||||||| ||| || |||||||| || || | ||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
28743948 |
ttccatttttgaagtgatgaaacctcaaggagtctctgacaacaattataacaccgacaaccttagacatatacttaatggcattgtgacaatcaccgca |
28743849 |
T |
|
| Q |
222 |
tattctcaaattcttataaa-ccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctca |
320 |
Q |
| |
|
|||||||||||||||| ||| || ||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| | | ||| ||||| |
|
|
| T |
28743848 |
tattctcaaattcttaaaaacccgtattgtcgactgtccattcaaattaagtatcccaaaggcaacagcaagcttctcactatggttacagagactctca |
28743749 |
T |
|
| Q |
321 |
gctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttattt |
390 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||||| ||| |||| |
|
|
| T |
28743748 |
gctttttcctcttgatcaatatcttgcagaacataatcagtgtcaggcttatatccagccattttcattt |
28743679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 83 - 390
Target Start/End: Original strand, 13792255 - 13792563
Alignment:
| Q |
83 |
ctgagtcaaatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaac |
182 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| |||| | |||||| |
|
|
| T |
13792255 |
ctgagtcaaataatcaccaaaaatctttacaagaacaatttccatttttgaagtgatgaaacctcaaggagtctctgacgacaatcgtcacaccaacaac |
13792354 |
T |
|
| Q |
183 |
cttagacatatacttaatggcattgtgacaatcaccacatattctcaaattcttataaacca-tatcatcgactgtccattcaaattaagtatcccgaat |
281 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
13792355 |
attggacatatacttaatggcattatgacaatcaccacatattctcaaattcttaaaaacccgtatcgtcgactgtccattcaaattaagtatcccaaat |
13792454 |
T |
|
| Q |
282 |
gcaaccgcaagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagcca |
381 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
13792455 |
gcaacagcaagcttctcactatggttacaaagactctcagctttttcctcttgatcaatatcatgcagaacataatcagtgtcaggcttatatccagccg |
13792554 |
T |
|
| Q |
382 |
cttttattt |
390 |
Q |
| |
|
||||||||| |
|
|
| T |
13792555 |
cttttattt |
13792563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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