View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_76 (Length: 401)
Name: NF1139_low_76
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_76 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 80 - 305
Target Start/End: Complemental strand, 3602540 - 3602307
Alignment:
| Q |
80 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttatt--- |
176 |
Q |
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| T |
3602540 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtagtaaatttgaacccttattaat |
3602441 |
T |
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| Q |
177 |
aatatattgtattatgtgtaagttttcattgtaag-aaacaatatagttaagaacctatttaatattttt----tattccaaaaataggtgatagtgaga |
271 |
Q |
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| T |
3602440 |
aatatattgtattatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattcctaaaataggtgatagtgaga |
3602341 |
T |
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| Q |
272 |
gggcagtgaaggctgccaatgaaggaggaaaagt |
305 |
Q |
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| T |
3602340 |
gggcagtgaaggctgccaatgaaggaggaaaagt |
3602307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 80 - 305
Target Start/End: Complemental strand, 3598380 - 3598150
Alignment:
| Q |
80 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaat |
179 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
3598380 |
gattatacaaaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaat |
3598281 |
T |
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| Q |
180 |
atattgtattatgtgtaagttttcattgtaag-aaacaatatagttaagaacctatttaatattttt----tattccaaaaataggtgatagtgagaggg |
274 |
Q |
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| T |
3598280 |
atgttgtataatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattccaaaaataggtgatagtgagaggg |
3598181 |
T |
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| Q |
275 |
cagtgaaggctgccaatgaaggaggaaaagt |
305 |
Q |
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| T |
3598180 |
cagtgaaggctgccaatgaaggaggaaaagt |
3598150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 80 - 303
Target Start/End: Complemental strand, 3595155 - 3594927
Alignment:
| Q |
80 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaat |
179 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
3595155 |
gattatacaaaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaat |
3595056 |
T |
|
| Q |
180 |
atattgtattatgtgtaagttttcattgta-agaaacaatatagttaagaacctatttaatattttt----tattccaaaaataggtgatagtgagaggg |
274 |
Q |
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| T |
3595055 |
atgttgtataatgtgtaagttttcattgtataaaaacaatatagttaaaaacctattaaatattttttatatattccaaaaataggtgatagtgagaggg |
3594956 |
T |
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| Q |
275 |
cagtgaaggctgccaatgaaggaggaaaa |
303 |
Q |
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| T |
3594955 |
cactgaaggctgtaaatgaaggaggaaaa |
3594927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 12877009 - 12877079
Alignment:
| Q |
80 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagat |
150 |
Q |
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|||||||| |||||||||| |||||| || |||| |||||||||||||||| |||| ||||||||||||| |
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| T |
12877009 |
gattatacaaaggagaattttgaagacctgcctgagaagtttgatgtggtgtttgatacagtaggtaagat |
12877079 |
T |
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