View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_79 (Length: 400)

Name: NF1139_low_79
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_79
NF1139_low_79
[»] chr6 (8 HSPs)
chr6 (78-289)||(21971621-21971832)
chr6 (105-281)||(20205087-20205263)
chr6 (105-281)||(22099110-22099286)
chr6 (118-279)||(20237693-20237854)
chr6 (118-279)||(22131677-22131838)
chr6 (118-278)||(24385435-24385595)
chr6 (125-280)||(20085787-20085942)
chr6 (118-278)||(22205223-22205383)
[»] scaffold0074 (1 HSPs)
scaffold0074 (118-280)||(48047-48209)
[»] scaffold0007 (1 HSPs)
scaffold0007 (118-280)||(5574-5736)
[»] scaffold0264 (1 HSPs)
scaffold0264 (118-278)||(15730-15890)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 78 - 289
Target Start/End: Original strand, 21971621 - 21971832
Alignment:
Q  78 cataggccctgtttcaatgctatgaatgaaatacctattcgaatagcgaagcaggcaatggctgtaccaaattataccctctgggaaggaatgacacttt 177  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21971621 cataggccctgtttcaatgctgtgaatgaaatacctattcgaatagcgaagcaggcaatggctgtaccaaattataccctctgggaaggaatgacacttt 21971720  T
Q  178 gagtatagttgttccgttgcatttttgacacattgaacacaaaggcgaggcggaagatcacctcgacacatgaagagaccatacacaatttcttccactt 277  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21971721 gagtatagttgttccgttgcatttttgacgcattgaacacaaaggcgaggcggaagatcacctcgacacatgaagagaccatacgcaatttcttccactt 21971820  T
Q  278 taagccaataaa 289  Q
    ||||||||||||    
T  21971821 taagccaataaa 21971832  T

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Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 105 - 281
Target Start/End: Original strand, 20205087 - 20205263
Alignment:
Q  105 gaaatacctattcgaatagcgaagcaggcaatggctgtaccaaattataccctctgggaaggaatgacactttgagtatagttgttccgttgcatttttg 204  Q
    |||||||  ||| ||||||||||| | |||||||||||||||||||||||||| |||| || | ||||||||||||||||||| ||||||||| ||||||    
T  20205087 gaaatactgatttgaatagcgaagtaagcaatggctgtaccaaattataccctgtggggagtattgacactttgagtatagttcttccgttgcgtttttg 20205186  T
Q  205 acacattgaacacaaaggcgaggcggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaag 281  Q
    || ||||||||||| || | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20205187 acgcattgaacacagagtctagaaggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaag 20205263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 105 - 281
Target Start/End: Original strand, 22099110 - 22099286
Alignment:
Q  105 gaaatacctattcgaatagcgaagcaggcaatggctgtaccaaattataccctctgggaaggaatgacactttgagtatagttgttccgttgcatttttg 204  Q
    |||||||  ||| ||||||||||| | |||||||||||||||||||||||||| |||| || | ||||||||||||||||||| ||||||||| ||||||    
T  22099110 gaaatactgatttgaatagcgaagtaagcaatggctgtaccaaattataccctgtggggagtattgacactttgagtatagttcttccgttgcgtttttg 22099209  T
Q  205 acacattgaacacaaaggcgaggcggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaag 281  Q
    || ||||||||||| || | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22099210 acgcattgaacacagagtctagaaggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaag 22099286  T

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Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 118 - 279
Target Start/End: Original strand, 20237693 - 20237854
Alignment:
Q  118 gaatagcgaagcaggcaatggctgtaccaaattataccctctgggaaggaatgacactttgagtatagttgttccgttgcatttttgacacattgaacac 217  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||| | ||| ||||||||||||||| ||||||||  |||||||| ||||||||| |||    
T  20237693 gaatagcgaagcaagcagtggctgtaccaaattataccctttgggcaagaaagacactttgagtatatttgttccgcagcattttttacacattgaccac 20237792  T
Q  218 aaaggcgaggcggaagatcacctcgacacatgaagagaccatacacaatttcttccacttta 279  Q
    | ||||||   ||||| ||||||||||||| |||||| || |||||  ||||||||||||||    
T  20237793 agaggcgattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccacttta 20237854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 118 - 279
Target Start/End: Original strand, 22131677 - 22131838
Alignment:
Q  118 gaatagcgaagcaggcaatggctgtaccaaattataccctctgggaaggaatgacactttgagtatagttgttccgttgcatttttgacacattgaacac 217  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||| | ||| ||||||||||||||| ||||||||  |||||||| ||||||||| |||    
T  22131677 gaatagcgaagcaagcagtggctgtaccaaattataccctttgggcaagaaagacactttgagtatatttgttccgcagcattttttacacattgaccac 22131776  T
Q  218 aaaggcgaggcggaagatcacctcgacacatgaagagaccatacacaatttcttccacttta 279  Q
    | ||||||   ||||| ||||||||||||| |||||| || |||||  ||||||||||||||    
T  22131777 agaggcgattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccacttta 22131838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 118 - 278
Target Start/End: Complemental strand, 24385595 - 24385435
Alignment:
Q  118 gaatagcgaagcaggcaatggctgtaccaaattataccctctgggaaggaatgacactttgagtatagttgttccgttgcatttttgacacattgaacac 217  Q
    |||||| |||||| ||| ||||||||||||| |||||||| |||  | ||| ||||||||||||||| ||| || ||||||||||| ||||||||| |||    
T  24385595 gaatagtgaagcaagcagtggctgtaccaaactataccctttggagatgaacgacactttgagtatatttggtcagttgcattttttacacattgaccac 24385496  T
Q  218 aaaggcgaggcggaagatcacctcgacacatgaagagaccatacacaatttcttccacttt 278  Q
    | || |||   ||||| |||||||||||||||||||| || ||||| ||||||||||||||    
T  24385495 agagacgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttt 24385435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 125 - 280
Target Start/End: Original strand, 20085787 - 20085942
Alignment:
Q  125 gaagcaggcaatggctgtaccaaattataccctctgggaaggaatgacactttgagtatagttgttccgttgcatttttgacacattgaacacaaaggcg 224  Q
    |||||| ||| |||||||||||||||||||||| |||  | ||| ||||||||||||||| ||| || ||||||||||| ||||||||| |||| |||||    
T  20085787 gaagcaagcagtggctgtaccaaattataccctttggagatgaaagacactttgagtatatttggtcagttgcattttttacacattgaccacagaggcg 20085886  T
Q  225 aggcggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaa 280  Q
    |   ||||| ||||||||||||| |||||| || ||||| ||||| ||||||||||    
T  20085887 aacaggaaggtcacctcgacacaagaagaggccgtacaccatttcatccactttaa 20085942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 278
Target Start/End: Complemental strand, 22205383 - 22205223
Alignment:
Q  118 gaatagcgaagcaggcaatggctgtaccaaattataccctctgggaaggaatgacactttgagtatagttgttccgttgcatttttgacacattgaacac 217  Q
    |||||||||| || ||| ||||||||||||||||| ||||  ||  | ||| ||||||||||||||| ||| |||||||||||||| ||||||||| | |    
T  22205383 gaatagcgaaccaagcagtggctgtaccaaattatgcccttaggacatgaaagacactttgagtatatttgatccgttgcatttttaacacattgaccgc 22205284  T
Q  218 aaaggcgaggcggaagatcacctcgacacatgaagagaccatacacaatttcttccacttt 278  Q
    | ||| ||   ||||| |||||||||||||||||||| || ||||| ||||||||||||||    
T  22205283 agaggtgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttt 22205223  T

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Target: scaffold0074 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 48209 - 48047
Alignment:
Q  118 gaatagcgaagcaggcaatggctgtaccaaattataccctctgggaaggaatgacactttgagtatagttgttccgttgcatttttgacacattgaacac 217  Q
    |||||||||| || ||| |||||||||||||||||||||| |||  | ||| ||||||||||||||| ||| |||||||| ||||| ||||||||| |||    
T  48209 gaatagcgaaccaagcagtggctgtaccaaattataccctttggagatgaaagacactttgagtatatttggtccgttgcttttttcacacattgaccac 48110  T
Q  218 aaaggcgaggcggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaa 280  Q
    | ||||||   ||||| |||||||||||||||||||| |||||||  ||||||||||||||||    
T  48109 agaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaa 48047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 5736 - 5574
Alignment:
Q  118 gaatagcgaagcaggcaatggctgtaccaaattataccctctgggaag-gaatgacactttgagtatagttgttccgttgcatttttgacacattgaaca 216  Q
    |||||||||| || ||| |||||||||||||||||||||| ||||| | ||| ||||||||||||||| ||| |||||||||||||| |||||| || ||    
T  5736 gaatagcgaaccaagcagtggctgtaccaaattataccct-tgggacgtgaaagacactttgagtatatttgatccgttgcatttttcacacatcgagca 5638  T
Q  217 caaaggcgaggcggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaa 280  Q
    || ||| ||   ||||| |||||||||||||||||||| |||||||   |||||||||||||||    
T  5637 cagaggtgaacgggaaggtcacctcgacacatgaagaggccatacagcgtttcttccactttaa 5574  T

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Target: scaffold0264 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 118 - 278
Target Start/End: Original strand, 15730 - 15890
Alignment:
Q  118 gaatagcgaagcaggcaatggctgtaccaaattataccctctgggaaggaatgacactttgagtatagttgttccgttgcatttttgacacattgaacac 217  Q
    |||||||||| || ||| ||||||||||||||||| ||||  ||  |  || ||||||||||||||| ||| |||||||||||||| ||||||||| | |    
T  15730 gaatagcgaaccaagcagtggctgtaccaaattatgcccttaggacatcaaagacactttgagtatatttgatccgttgcatttttaacacattgaccgc 15829  T
Q  218 aaaggcgaggcggaagatcacctcgacacatgaagagaccatacacaatttcttccacttt 278  Q
    | ||| ||   ||||| |||||||||||||||||||| || ||||| ||||||||||||||    
T  15830 agaggtgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttt 15890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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