View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_80 (Length: 398)
Name: NF1139_low_80
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 30 - 386
Target Start/End: Original strand, 7021206 - 7021562
Alignment:
| Q |
30 |
ttattgaattatcgtttctattttgtttcattttctatactttaagcggatttatatatttc-aacatttctttatcatggtatcatgtagattacatcg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
7021206 |
ttattgaattatcgtttctattttgtttcattttctatactttaagcggatttatatatttctaacatttctttatcatggtatcatatagattacatcg |
7021305 |
T |
|
| Q |
129 |
tctgctgtatccaactattttggttagaaattatgggttatttgttgataccaatttcatgatgtagttgtcttaagtttcttgatattatttaatagaa |
228 |
Q |
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| T |
7021306 |
tctgctgtatccaactattt-ggttagaagttatgggttatttgttgataccaatttcatgatgtagttgtcttaagtttcttgatattatttaatagaa |
7021404 |
T |
|
| Q |
229 |
tgaggnnnnnnnnnnntatttgttgttcatgcaatgcctaagactcatagcaatggtgaatgataggaggattcaataatagaatttggatcaagattaa |
328 |
Q |
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| T |
7021405 |
tgagggaaaaaaaaaatatttgttgtttatgcaatgcctaagactcatagcaatggtgaatgatagtaggattcaataatagaatttggatcaagattaa |
7021504 |
T |
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| Q |
329 |
tgattgtggttaaatagtgacctccccccacttttgcaattatcaacactcctcccta |
386 |
Q |
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| T |
7021505 |
tgattgtggttaaatagtgacctccccccacttttgcaattatcaacactcctcccta |
7021562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 4151514 - 4151557
Alignment:
| Q |
105 |
catggtatcatgtagattacatcgtctgctgtatccaactattt |
148 |
Q |
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| T |
4151514 |
catggtatcatgtagattacatcgtctgctatatccaactattt |
4151557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 4167283 - 4167323
Alignment:
| Q |
105 |
catggtatcatgtagattacatcgtctgctgtatccaacta |
145 |
Q |
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| T |
4167283 |
catggtatcatgtagattacatcgtctgctatatccaacta |
4167323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 4151432 - 4151461
Alignment:
| Q |
39 |
tatcgtttctattttgtttcattttctata |
68 |
Q |
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| T |
4151432 |
tatcgtttctattttgtttcattttctata |
4151461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 4167201 - 4167230
Alignment:
| Q |
39 |
tatcgtttctattttgtttcattttctata |
68 |
Q |
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| T |
4167201 |
tatcgtttctattttgtttcattttctata |
4167230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 25217645 - 25217693
Alignment:
| Q |
50 |
ttttgtttcattttctatactttaagcggatttatatatttcaacattt |
98 |
Q |
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| T |
25217645 |
ttttgtttcatttattatactttaagggaatttatatatttcaatattt |
25217693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 25281800 - 25281848
Alignment:
| Q |
50 |
ttttgtttcattttctatactttaagcggatttatatatttcaacattt |
98 |
Q |
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||||||||||||| ||||||||||| | ||||||||||||||| |||| |
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| T |
25281800 |
ttttgtttcatttattatactttaagggaatttatatatttcaatattt |
25281848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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