View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_84 (Length: 395)

Name: NF1139_low_84
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_84
NF1139_low_84
[»] chr1 (5 HSPs)
chr1 (133-236)||(46208076-46208180)
chr1 (138-304)||(50269307-50269473)
chr1 (141-304)||(46209425-46209591)
chr1 (199-301)||(42887759-42887861)
chr1 (248-304)||(18106707-18106763)
[»] chr5 (5 HSPs)
chr5 (188-303)||(21550031-21550146)
chr5 (162-304)||(37253400-37253543)
chr5 (249-301)||(21550365-21550417)
chr5 (167-235)||(37256018-37256086)
chr5 (248-304)||(16287508-16287564)
[»] chr2 (12 HSPs)
chr2 (157-304)||(20188309-20188458)
chr2 (200-304)||(45231519-45231623)
chr2 (199-304)||(20193176-20193280)
chr2 (248-304)||(19194074-19194130)
chr2 (167-304)||(45230041-45230180)
chr2 (246-304)||(5326196-5326254)
chr2 (248-304)||(28319231-28319287)
chr2 (248-304)||(35935368-35935424)
chr2 (248-304)||(9775587-9775643)
chr2 (256-304)||(22699081-22699129)
chr2 (248-304)||(35844740-35844796)
chr2 (256-304)||(35844947-35844995)
[»] chr6 (4 HSPs)
chr6 (138-236)||(15380982-15381079)
chr6 (199-304)||(655526-655631)
chr6 (156-225)||(24325389-24325459)
chr6 (248-304)||(9362742-9362798)
[»] chr4 (6 HSPs)
chr4 (167-304)||(47487834-47487971)
chr4 (248-299)||(14612363-14612414)
chr4 (200-301)||(47489307-47489407)
chr4 (253-302)||(51986232-51986281)
chr4 (256-304)||(40259802-40259850)
chr4 (256-304)||(51987243-51987291)
[»] chr8 (3 HSPs)
chr8 (199-304)||(29636900-29637005)
chr8 (158-217)||(45393936-45393995)
chr8 (255-299)||(32731308-32731352)
[»] scaffold0735 (1 HSPs)
scaffold0735 (199-301)||(712-814)
[»] chr7 (5 HSPs)
chr7 (187-304)||(28086472-28086589)
chr7 (246-304)||(1920933-1920991)
chr7 (255-303)||(28087757-28087805)
chr7 (248-304)||(38723029-38723085)
chr7 (248-304)||(45782021-45782077)
[»] chr3 (6 HSPs)
chr3 (166-301)||(46692968-46693104)
chr3 (201-304)||(22341231-22341334)
chr3 (248-299)||(32463424-32463474)
chr3 (252-299)||(48743135-48743182)
chr3 (249-304)||(37282954-37283009)
chr3 (248-304)||(2683198-2683254)
[»] scaffold0005 (1 HSPs)
scaffold0005 (248-299)||(204963-205014)
[»] scaffold0169 (1 HSPs)
scaffold0169 (246-304)||(25002-25060)
[»] scaffold0010 (1 HSPs)
scaffold0010 (248-304)||(128351-128407)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 46208180 - 46208076
Alignment:
Q  133 tacctacgtggcgtccatctcaaggccacgtgggctttgacctggtcaaaatagga-ggggccactaagttgcaaaagggggtgaaattggggggctgga 231  Q
    |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| |||| |||||||||| |||||||| ||||||| |||||    
T  46208180 tacccacgtggcgtccatctcatggccacgtgggctttgacctagtcaaaataggagggggtcactgagttgcaaaaaggggtgaagttgggggtctgga 46208081  T
Q  232 aagtt 236  Q
    |||||    
T  46208080 aagtt 46208076  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 138 - 304
Target Start/End: Complemental strand, 50269473 - 50269307
Alignment:
Q  138 acgtggcgtccatctcaaggccacgtgggctttgacctggtcaaaataggaggggc-cactaagttgcaaaagggggtgaaattggggggctggaaagtt 236  Q
    ||||||||||||||| | ||| || ||||||||||||  ||||||||  ||||||  |||| |||||||||||||||||||||| ||||||||||||||     
T  50269473 acgtggcgtccatctaatggctacctgggctttgacccagtcaaaatcagagggggtcactgagttgcaaaagggggtgaaattagggggctggaaagtg 50269374  T
Q  237 annnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |        |||||||| |||||||||||||||||  ||||||||| || ||||||||||||||||||    
T  50269373 attttttttaatagggg-ccaaaattgctacgaaggtaaacatagggggtcaaaagtgcattttagcc 50269307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 141 - 304
Target Start/End: Original strand, 46209425 - 46209591
Alignment:
Q  141 tggcgtccatctcaaggccacgtgggctttgacctggtcaaaatagga-ggggccactaagttgcaaaa-gggggtgaaatt-ggggggctggaaagtta 237  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||| || ||||||||| ||  ||     
T  46209425 tggcatccatctcatggccacgtgggctttgacccggtcaaaataggagggggccactgagttgcaaaaggggggtgaagttgggggggctgaaattttt 46209524  T
Q  238 nnnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
            |||||| | |||||||||||||| ||||||||||||| ||| |||||||||||||||||    
T  46209525 ttttttttaataggaggccaaaattgctacggagccaaacatagggggctaaaagtgcattttagcc 46209591  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 42887759 - 42887861
Alignment:
Q  199 agttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcatt 298  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||| |||||||||| | |||||||||||||||| |||| |||||||    
T  42887759 agttgcaaaagggggtaaaattggggggctgaaaagtgtttttttttaataggggacaaaaattgctatggagccaaacataggaggtcaaatgtgcatt 42887858  T
Q  299 tta 301  Q
    |||    
T  42887859 tta 42887861  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 18106763 - 18106707
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| ||||||||||||||| |  |||||||||| | ||||||||||||| ||||    
T  18106763 tagggggccaaaattgctacgacggaaaacataggatgtcaaaagtgcatttaagcc 18106707  T

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Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 188 - 303
Target Start/End: Complemental strand, 21550146 - 21550031
Alignment:
Q  188 aggggccactaagttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggcc 287  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||        || ||||| ||||||||||||||  |||||||||||| ||||    
T  21550146 aggggccactgagttgcaaaagggggtgaaattggggggctgaaaagttagtttttttaacaggggcccaaaattgctacggggccaaacatagggggcc 21550047  T
Q  288 aaaagtgcattttagc 303  Q
    ||||||||||||||||    
T  21550046 aaaagtgcattttagc 21550031  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 304
Target Start/End: Complemental strand, 37253543 - 37253400
Alignment:
Q  162 gtgggctttgacctggtcaaaataggagggg-ccactaagttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaa 260  Q
    |||| |||||||| |||||||||  |||||| ||  ||| ||||||||||||||||| || ||||| |||||||| |        |||| ||| ||||||    
T  37253543 gtggcctttgaccgggtcaaaattagagggggcctataaattgcaaaagggggtgaagttagggggttggaaagtgatattttttaataaggggccaaaa 37253444  T
Q  261 ttgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||||  |||||||||||| ||| ||||| ||||||||||||    
T  37253443 ttgctacagagccaaacatagaaggtcaaaaatgcattttagcc 37253400  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 21550365 - 21550417
Alignment:
Q  249 aggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcatttta 301  Q
    ||||||||||||||||||||  |||||||||||  ||||||||||||||||||    
T  21550365 aggggaccaaaattgctacggtgccaaacatagacggccaaaagtgcatttta 21550417  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 37256018 - 37256086
Alignment:
Q  167 ctttgacctggtcaaaataggagg-ggccactaagttgcaaaagggggtgaaattggggggctggaaagt 235  Q
    ||||||||||||||||||  |||| ||||  |||||||||||||||||| |||||  |||||||||||||    
T  37256018 ctttgacctggtcaaaatcagaggaggcctataagttgcaaaagggggtaaaatt-aggggctggaaagt 37256086  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 16287564 - 16287508
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| | ||||||||||||| | ||||||||||||| ||||| ||||||| ||||    
T  16287564 tagggggctaaaattgctacgacggcaaacataggaggtcaaaaatgcatttaagcc 16287508  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 157 - 304
Target Start/End: Complemental strand, 20188458 - 20188309
Alignment:
Q  157 gccacgtgggctttgacctggtcaaaataggagggg-ccactaagttgcaaaagggggtgaaattggggggctggaaagtta-nnnnnnnnaatagggga 254  Q
    ||||| ||||| ||||||| |||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||||||||||         ||||||||     
T  20188458 gccacatgggcattgacctagtcaaaatagaagggggccactgagttgcaaaagggggtgaagttggggggctggaaagttatttttttttaataggggg 20188359  T
Q  255 ccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    ||||||||||||||  ||||||  |||| ||| |||||||||||||||||    
T  20188358 ccaaaattgctacggggccaaatttagggggcaaaaagtgcattttagcc 20188309  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 200 - 304
Target Start/End: Original strand, 45231519 - 45231623
Alignment:
Q  200 gttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattt 299  Q
    |||||||||||||||||| || ||||| |||||||| |        |||||||| |||||||||||||| |||| |||||||| ||||||||||||||||    
T  45231519 gttgcaaaagggggtgaagttagggggttggaaagtgattgtttttaatagggggccaaaattgctacggagcctaacatagggggccaaaagtgcattt 45231618  T
Q  300 tagcc 304  Q
    |||||    
T  45231619 tagcc 45231623  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 20193176 - 20193280
Alignment:
Q  199 agttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcatt 298  Q
    ||||||||||||||||||| ||||||| ||||||||||         |||||||| ||||||||||||||  ||||||| |||| | |||||||||||||    
T  20193176 agttgcaaaagggggtgaagttggggg-ctggaaagtttttttttttaatagggggccaaaattgctacggggccaaacttaggggaccaaaagtgcatt 20193274  T
Q  299 ttagcc 304  Q
    ||||||    
T  20193275 ttagcc 20193280  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 19194130 - 19194074
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||||||| ||||    
T  19194130 tagggggccaaaattgctacgaagacaaacatagggggccaaaagtgcatttaagcc 19194074  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 304
Target Start/End: Complemental strand, 45230180 - 45230041
Alignment:
Q  167 ctttgacctggtcaaaataggagggg-ccactaagttgcaaaagggggtgaaatt-ggggggctggaaagttannnnnnnnaataggggaccaaaattgc 264  Q
    |||||||| |||||||||  |||||| || || |||||||||||||||||||  | ||||||||| ||||| |        |||| ||  |||||||| |    
T  45230180 ctttgacccggtcaaaatcagagggggcctctgagttgcaaaagggggtgaaggtaggggggctgaaaagtgattttttttaataaggagccaaaattac 45230081  T
Q  265 tacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  45230080 tacgaagccaaacatagggagccaaaagtgcattttagcc 45230041  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 5326254 - 5326196
Alignment:
Q  246 aataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| | |||||||||||||  ||||||| ||||| |||||||||||||||||||||    
T  5326254 aataggaggccaaaattgctacagagccaaatatagggggccaaaagtgcattttagcc 5326196  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 28319231 - 28319287
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||||||||||||||||||    ||||||||||||| ||||||||||||| ||||    
T  28319231 taggggaccaaaattgctacggttgcaaacataggaggtcaaaagtgcatttaagcc 28319287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 35935424 - 35935368
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| ||||||||||||||| | |||| ||||| |||||||||||||||| ||||    
T  35935424 tagggggccaaaattgctacgacggcaaatatagggggccaaaagtgcatttaagcc 35935368  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 9775587 - 9775643
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| |||||||| |||| | | |||||||| |||||||||||||||||| ||||    
T  9775587 tagggggccaaaattactacaacggcaaacataagaggccaaaagtgcatttaagcc 9775643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 22699081 - 22699129
Alignment:
Q  256 caaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||||||||||| | |||||||||| || ||||||||||||| ||||    
T  22699081 caaaattgctacgacggcaaacatagggggtcaaaagtgcatttaagcc 22699129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 35844796 - 35844740
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| ||||||||||||||| | |||||||||| |||||||| | ||||| ||||    
T  35844796 tagggggccaaaattgctacgatggcaaacatagggggccaaaacttcatttaagcc 35844740  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 35844947 - 35844995
Alignment:
Q  256 caaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||||||||||||| |||||||||  |||||||| ||||||| ||||    
T  35844947 caaaattgctacgaaggcaaacatagagggccaaaaatgcatttaagcc 35844995  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 15380982 - 15381079
Alignment:
Q  138 acgtggcgtccatctcaaggccacgtgggctttgacctggtcaaaatagga-ggggccactaagttgcaaaagggggtgaaattggggggctggaaagtt 236  Q
    ||||||||||||||| | |||||| |||||||||||| ||||||||||||| ||||||||| ||  ||||||||||||||| ||||||||||| ||||||    
T  15380982 acgtggcgtccatctaagggccacatgggctttgaccgggtcaaaataggagggggccactgag--gcaaaagggggtgaagttggggggctgcaaagtt 15381079  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 304
Target Start/End: Complemental strand, 655631 - 655526
Alignment:
Q  199 agttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcatt 298  Q
    ||||||||||||||||||| || ||||||| |||||| |        |||||||| ||||||||||||| | | |||||||||| |||||||||||||||    
T  655631 agttgcaaaagggggtgaagttagggggctagaaagtgattttttttaatagggggccaaaattgctaccatggcaaacatagggggccaaaagtgcatt 655532  T
Q  299 ttagcc 304  Q
    | ||||    
T  655531 taagcc 655526  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 24325459 - 24325389
Alignment:
Q  156 ggccacgtgggctttgacctggtcaaaataggagggg-ccactaagttgcaaaagggggtgaaattggggg 225  Q
    |||||| |||||||||||| ||||||||||||||||| ||| | ||||||||||| ||||||| |||||||    
T  24325459 ggccacatgggctttgacccggtcaaaataggaggggaccattgagttgcaaaagcgggtgaagttggggg 24325389  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 9362798 - 9362742
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||||||||||||||||||  | |||||||||  |||||||||||||||| ||||    
T  9362798 taggggaccaaaattgctacggcggcaaacatagtgggccaaaagtgcatttaagcc 9362742  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 304
Target Start/End: Complemental strand, 47487971 - 47487834
Alignment:
Q  167 ctttgacctggtcaaaataggagggg-ccactaagttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgct 265  Q
    |||||||| |||||||||| |||||| || || |||||||||||||| || | || |||||||| ||||| |        |||| ||| |||||||||||    
T  47487971 ctttgacccggtcaaaataagagggggcctctgagttgcaaaagggg-tggagttagggggctgaaaagtgattttttttaataaggggccaaaattgct 47487873  T
Q  266 acgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  47487872 acgaagccaaacatagggggtcaaaagtgcattttagcc 47487834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 14612363 - 14612414
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattt 299  Q
    |||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  14612363 taggggaccaaaattgctacgatgacaaacataggaggccaaaagtacattt 14612414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 47489307 - 47489407
Alignment:
Q  200 gttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattt 299  Q
    |||||||||||||||||| || ||||| |||||||| |        |||| ||| |||||||||||||| |||| |||||||| ||||||||||||||||    
T  47489307 gttgcaaaagggggtgaagttagggggttggaaagtgattttttttaatatggggccaaaattgctacggagcctaacatagg-ggccaaaagtgcattt 47489405  T
Q  300 ta 301  Q
    ||    
T  47489406 ta 47489407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 51986281 - 51986232
Alignment:
Q  253 gaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttag 302  Q
    |||||||||||||||| || |||||||||  | |||||||||||||||||    
T  51986281 gaccaaaattgctacggagtcaaacatagaggaccaaaagtgcattttag 51986232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 40259802 - 40259850
Alignment:
Q  256 caaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    ||||||| |||||| | |||||||||| |||||||||||||||| ||||    
T  40259802 caaaattactacgatggcaaacatagggggccaaaagtgcatttaagcc 40259850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 51987243 - 51987291
Alignment:
Q  256 caaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    ||||||||||| | || ||||||||||||||||||  ||||||||||||    
T  51987243 caaaattgctatggagtcaaacataggaggccaaagttgcattttagcc 51987291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 29636900 - 29637005
Alignment:
Q  199 agttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcatt 298  Q
    |||||||||||||||||||||| ||||||||||||||          ||||||||  ||||||||||||| ||||||| ||||  |||||||||||||||    
T  29636900 agttgcaaaagggggtgaaattagggggctggaaagtatttttttttaatagggggtcaaaattgctacggagccaaatatagagggccaaaagtgcatt 29636999  T
Q  299 ttagcc 304  Q
    ||||||    
T  29637000 ttagcc 29637005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 45393936 - 45393995
Alignment:
Q  158 ccacgtgggctttgacctggtcaaaataggaggggccactaagttgcaaaagggggtgaa 217  Q
    ||||||||||||||||| ||||||||||||||||| || | || ||||||||||||||||    
T  45393936 ccacgtgggctttgacccggtcaaaataggaggggtcaatgagatgcaaaagggggtgaa 45393995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 32731352 - 32731308
Alignment:
Q  255 ccaaaattgctacgaagccaaacataggaggccaaaagtgcattt 299  Q
    ||||||||| ||||| | |||||||||| ||||||||||||||||    
T  32731352 ccaaaattgttacgatgtcaaacatagggggccaaaagtgcattt 32731308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 712 - 814
Alignment:
Q  199 agttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcatt 298  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||| |||||||||| | |||||||||||||||| |||| |||||||    
T  712 agttgcaaaagggggtaaaattggggggctgaaaagtgtttttttttaataggggacaaaaattgctatggagccaaacataggaggtcaaatgtgcatt 811  T
Q  299 tta 301  Q
    |||    
T  812 tta 814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 304
Target Start/End: Complemental strand, 28086589 - 28086472
Alignment:
Q  187 gaggggccactaagttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggc 286  Q
    ||||||||  ||||||||||||||||||||| || |||||||||||| | |        ||| |||| |||||||||||||  ||||||||||| | ||     
T  28086589 gaggggcctataagttgcaaaagggggtgaagttagggggctggaaaatgattttttttaatcgggggccaaaattgctacagagccaaacataaggggg 28086490  T
Q  287 caaaagtgcattttagcc 304  Q
    ||||||||||||||||||    
T  28086489 caaaagtgcattttagcc 28086472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 1920991 - 1920933
Alignment:
Q  246 aataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||||| ||||||||| ||||| | |||||||||| |||||||||||| ||| ||||    
T  1920991 aatagggggccaaaattgttacgatggcaaacatagggggccaaaagtgcgtttaagcc 1920933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 28087757 - 28087805
Alignment:
Q  255 ccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagc 303  Q
    |||||||||||||| || |||| ||| | ||||||||||||||||||||    
T  28087757 ccaaaattgctacggagtcaaatataaggggccaaaagtgcattttagc 28087805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 38723029 - 38723085
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| |||||| |||||||| | |||||||||| | |||||||||||||| ||||    
T  38723029 tagggggccaaaactgctacgatggcaaacataggggtccaaaagtgcatttaagcc 38723085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 45782077 - 45782021
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| ||||||||||||||  | |||||||||| | |||||||||||||| ||||    
T  45782077 tagggggccaaaattgctacggtggcaaacataggggaccaaaagtgcatttaagcc 45782021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 301
Target Start/End: Complemental strand, 46693104 - 46692968
Alignment:
Q  166 gctttgacctggtcaaaataggaggggcc-actaagttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgc 264  Q
    ||||||||| ||| |||||||||||||   ||| |||||||||  |||||||| ||||||||| ||||||||         |||||||| | |||||| |    
T  46693104 gctttgaccgggttaaaataggagggggttactgagttgcaaacaggggtgaagttggggggcaggaaagtttttttttttaataggggccaaaaattac 46693005  T
Q  265 tacgaagccaaacataggaggccaaaagtgcatttta 301  Q
    |||| |||||||| |||| ||||||||||||||||||    
T  46693004 tacggagccaaacttagggggccaaaagtgcatttta 46692968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 22341334 - 22341231
Alignment:
Q  201 ttgcaaaagggggtgaaattggggggctggaaagttannnnnnnnaataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcatttt 300  Q
    |||||||| |||||||| || |||||||||||||| |        |||||  |||||||||||||| | ||||||| ||||| || ||||||||||||||    
T  22341334 ttgcaaaaaggggtgaagttagggggctggaaagtgattttttttaatagaagaccaaaattgctatggagccaaatatagggggtcaaaagtgcatttt 22341235  T
Q  301 agcc 304  Q
    ||||    
T  22341234 agcc 22341231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 32463474 - 32463424
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattt 299  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||||||||    
T  32463474 taggggaccaaaattgctacgatgacaaacatagg-ggccaaaagtgcattt 32463424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 48743182 - 48743135
Alignment:
Q  252 ggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattt 299  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||    
T  48743182 ggaccaaaattgctacgacggcaaacatagggggccaaaagtgcattt 48743135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 37283009 - 37282954
Alignment:
Q  249 aggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    ||||| |||||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  37283009 agggggccaaaattactacggagccaaacataaggggtcaaaagtgcattttagcc 37282954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 2683198 - 2683254
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| ||||||||||||||  | |||| ||||| |||||||||||||||| ||||    
T  2683198 tagggggccaaaattgctacggtggcaaatatagggggccaaaagtgcatttaagcc 2683254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 205014 - 204963
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattt 299  Q
    |||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  205014 taggggaccaaaattgctacgatgacaaacataggaggccaaaagtacattt 204963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 25060 - 25002
Alignment:
Q  246 aataggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| | ||||||||||||||  | |||||||||| |||||||||||||||||||||    
T  25060 aataggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcattttagcc 25002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 128407 - 128351
Alignment:
Q  248 taggggaccaaaattgctacgaagccaaacataggaggccaaaagtgcattttagcc 304  Q
    |||||| ||||||||| ||||| | |||||||||| |||||||||||||||| ||||    
T  128407 tagggggccaaaattgatacgacggcaaacatagggggccaaaagtgcatttaagcc 128351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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