View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_87 (Length: 391)
Name: NF1139_low_87
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_87 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 30 - 384
Target Start/End: Original strand, 18077011 - 18077365
Alignment:
| Q |
30 |
agttctgaatcagcgtcgttgaacgacggtgaaggtgatgatgtggcggcagcagctgttgaatctgttcctggtcgagaaaaacaaactatggatgttg |
129 |
Q |
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| T |
18077011 |
agttctgaatcagcgtcgttgaacgacggtgaaggtgatgatgtggcggcagcagctgttgaatctgttcctggtcgagaaaaacaaactatggatgttg |
18077110 |
T |
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| Q |
130 |
gcgccaatacagtggtggtgttgtcgtcagacgatgaaggttccgttgaagctgatgacatggcagctaaggattctgatgaaaataatgctgcacaaga |
229 |
Q |
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| T |
18077111 |
gcgccaatacagtggtggtgttgtcgtcagacgatgaaggttccgttgaagctgatgacatggaagctaaggattctgatgaaaacaatgttgcacaaga |
18077210 |
T |
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| Q |
230 |
gggtgaggaaaatgtcatgaaagagaagaagagtgctggtagnnnnnnnnnnnnggaactttagagtggaatttcatcaccaggatctagtcatttgaat |
329 |
Q |
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| T |
18077211 |
gggtgaggaaaatgtcatgaaagagaagaagagtgctggtagaaaaagaaaaaaggaactttagagtggaatttcatcaccaggatctagtcatttgaat |
18077310 |
T |
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| Q |
330 |
ttgctcatttttcttgatgtcaatttaggtttataatctttaattatattcttgg |
384 |
Q |
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| T |
18077311 |
ttgctcatttttcttgatgtacatttaggtttataatctttaattatatttttgg |
18077365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 45 - 261
Target Start/End: Original strand, 18078931 - 18079146
Alignment:
| Q |
45 |
tcgttgaacgacggtgaaggtgatgatgtggcggcagcagctgttgaatctgttcctggtcgagaaaaacaaactatggatgttggcgccaatacagtgg |
144 |
Q |
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| T |
18078931 |
tcgttgaacgacgctgaaggtgacgacgtggcagcagcagttgaagaatttgctcctgatcgagaaaaacaagctatggactttggcgccaaaatggtgt |
18079030 |
T |
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| Q |
145 |
tggtgttgtcgtcagacgatgaaggttccgttgaagctgatgacatggcagctaaggattctgatgaaaataatgctgcacaagagggtgaggaaaatgt |
244 |
Q |
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|| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
18079031 |
tgctgttgtcgacggacgatgaaggttctgttgaagctgatgacatggcagctaaggattctgatgaaaacaatgctgcacaagagggtgaagaaaatgt |
18079130 |
T |
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| Q |
245 |
catgaaagagaagaaga |
261 |
Q |
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||| ||| ||||||||| |
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| T |
18079131 |
cat-aaaaagaagaaga |
18079146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 51474322 - 51474563
Alignment:
| Q |
30 |
agttctgaatcagcgtcgttgaacgacggtgaaggtgatgatgtggcggcagcagctgttgaatctgttcctggtcgagaaaaacaaactatggatgttg |
129 |
Q |
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||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||| |
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| T |
51474322 |
agttctgaaacagtgtcgttgaatgacggtgaaggtgatgatgtggcagcagcagctgaagaatatgttcctgatcgagaaaaacaaactatggatgttg |
51474421 |
T |
|
| Q |
130 |
gcgccaatacagtggtggtgttgtcgtcagacgatgaaggttccgttgaagctgatgacatggcagctaaggattctgatgaaaataatgctgcacaaga |
229 |
Q |
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||||||| |||||||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||| |
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| T |
51474422 |
gcgccaaagcagtggtgttgttgtcatcggacgatgaaggttccgttgaagctgatgacatggcaactaagaattctgatgaaaacaatgttgcacaaga |
51474521 |
T |
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| Q |
230 |
gggtgaggaaaatgtcatgaaagagaagaagagtgctggtag |
271 |
Q |
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| T |
51474522 |
gggtgaggaaaatgtcatgaaagagaagaagagtgctggtag |
51474563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 42 - 271
Target Start/End: Original strand, 51478534 - 51478763
Alignment:
| Q |
42 |
gcgtcgttgaacgacggtgaaggtgatgatgtggcggcagcagctgttgaatctgttcctggtcgagaaaaacaaactatggatgttggcgccaatacag |
141 |
Q |
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||||||||||| |||| |||| ||||||| |||| || || ||||| ||||||||||||| ||||| ||||||| ||||||||||| |||| || | |
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| T |
51478534 |
gcgtcgttgaaggacgatgaacgtgatgacgtggtggaagtagctgaagaatctgttcctgatcgaggaaaacaagacatggatgttggacccaaaacgg |
51478633 |
T |
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| Q |
142 |
tggtggtgttgtcgtcagacgatgaaggttccgttgaagctgatgacatggcagctaaggattctgatgaaaataatgctgcacaagagggtgaggaaaa |
241 |
Q |
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| T |
51478634 |
tggtgttgttgtcgacggacgatgatggttctgttgaagctgatagcatggcagctaaggattctgatgaaaacaatgctgcacaagagggtgaagaaaa |
51478733 |
T |
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| Q |
242 |
tgtcatgaaagagaagaagagtgctggtag |
271 |
Q |
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| T |
51478734 |
tgtcatgaaagagaagaagagagctggtag |
51478763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 384
Target Start/End: Original strand, 51474610 - 51474703
Alignment:
| Q |
291 |
tagagtggaatttcatcaccaggatctagtcatttgaatttgctcatttttcttgatgtcaatttaggtttataatctttaattatattcttgg |
384 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| |||||||| ||||||| |||| |
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| T |
51474610 |
tagagaggaatttcatcaccaggatctagtcatttgaagttgctcatttttcttgatgtacacttaggtttgcaatctttacttatatttttgg |
51474703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 51454352 - 51454515
Alignment:
| Q |
42 |
gcgtcgttgaacgacggtgaaggtgatgatgtggcggcagcagctgttgaatctgttcctggtcgagaaaaacaaactatggatgttggcgccaatacag |
141 |
Q |
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||||||||||| || | |||| ||||||| |||| || |||||||| |||||| |||||| ||||||||||||| | ||| ||||||||||||| || | |
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| T |
51454352 |
gcgtcgttgaaggatgatgaacgtgatgacgtggtggaagcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacgg |
51454451 |
T |
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| Q |
142 |
tggtggtgttgtcgtcagacgatgaaggttccgttgaagctgatgacatggcagctaaggattc |
205 |
Q |
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||||| | ||| | |||||||||||||| ||||||| ||||||||| ||||||| |||||| |
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| T |
51454452 |
tggtgtcgctgttgaaggacgatgaaggttcggttgaaggtgatgacattgcagctagggattc |
51454515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 51468115 - 51468159
Alignment:
| Q |
297 |
ggaatttcatcaccaggatctagtcatttgaatttgctcattttt |
341 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| ||||| |
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| T |
51468115 |
ggaattgcatcaccaggatctagtcatttgaagatgctctttttt |
51468159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 43159819 - 43159873
Alignment:
| Q |
90 |
gaatctgttcctggtcgagaaaaacaaactatggatgttggcgccaatacagtgg |
144 |
Q |
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||||||||||||| || |||||||||| ||||| |||||||||||||||| |||| |
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| T |
43159819 |
gaatctgttcctgatcaagaaaaacaagctatgaatgttggcgccaatacggtgg |
43159873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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