View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_88 (Length: 390)
Name: NF1139_low_88
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_88 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 12861183 - 12860804
Alignment:
| Q |
1 |
tttataaaacggttacacaaaccaatttcttcgtttcagagtttccacagtttttttaaatttattttatattaaaatgtnnnnnnnngttgaattttct |
100 |
Q |
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| T |
12861183 |
tttataaaacggttgtaacaaccaatttcttcgtttcagagtttccacagtttttttta-tttaatttatattaaaatgtaaaataaagttgcatttact |
12861085 |
T |
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| Q |
101 |
tttaaaattggggtttaattttttatgannnnnnnnnnnnnnnnnngccaattggctatgtttctgctttctatcactaatcactatgttgagcatacta |
200 |
Q |
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| T |
12861084 |
tttaatattggggtttaattatctatgttttttttttttttttgttgccaattggctatgtttctgctttctatcactaatcactatgttgagcatacta |
12860985 |
T |
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| Q |
201 |
tggttagcaaagggctataggtctctcgttcttttcatgatcatgagtttaaggaagctatgttttctatacaccgaaataaaagctcagttaacgtcag |
300 |
Q |
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| T |
12860984 |
cggttagcaaagggctataggtctctcgttcttttcatgttcatgagtttaaggaagttatgttttctatacaccgaaataaaagctcagttaacgtcag |
12860885 |
T |
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| Q |
301 |
gctggacgtgtgttctcagatgtcaaaatttagtgttgcatcttcatggttgcctctttggttgaggtgttggttctctgc |
381 |
Q |
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| T |
12860884 |
gttgggcgtgtgttctcagatgtcaaattttagtgttgcatcttcatggttgcctctttggttgaggtgttggttctctgc |
12860804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 380
Target Start/End: Original strand, 12833135 - 12833230
Alignment:
| Q |
285 |
gctcagttaacgtcaggctggacgtgtgttctcagatgtcaaaatttagtgttgcatcttcatggttgcctctttggttgaggtgttggttctctg |
380 |
Q |
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| T |
12833135 |
gctcggttaacgtcaggctgggcgtgtgttctcagatgtcaaattttagttttgcatctttgtggttgcctctttggctaaggtgctggttctctg |
12833230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 12844334 - 12844411
Alignment:
| Q |
1 |
tttataaaacggttacacaaaccaatttcttcgtttcagagtttccacagtttttttaaatttattttatattaaaatgt |
80 |
Q |
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| T |
12844334 |
tttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagttttttt--atttaatttatattaaaatgt |
12844411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 12844507 - 12844595
Alignment:
| Q |
185 |
tatgttgagcatactatggttagcaaagggctataggtctctcgttcttttcatgatcatgagtttaaggaagctatgttttctataca |
273 |
Q |
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| T |
12844507 |
tatgttgagcatactacggttagcacaaggctataggtctttggttcatttcagattcatgagtttaaggaagctatgttttctataca |
12844595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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