View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_9 (Length: 629)
Name: NF1139_low_9
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 82 - 348
Target Start/End: Original strand, 2566437 - 2566703
Alignment:
| Q |
82 |
gattccgggtttgattcattagctggaagaattagtgattattcagatattgaggaactatacttgttgaatcctaaagctttgcttccttgcttaatgg |
181 |
Q |
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| T |
2566437 |
gattccgggtttgattcattagctggaagaattagtgtttattcagatattgaggaactatacttgttgaatcctaaagctttgcttccttgctttgtgg |
2566536 |
T |
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| Q |
182 |
taatctacaaacaacaaaagatggaaattagaaggcgtcattcaattgcttaagagtgtgtttgtacggaaaattatagagaaattgaaattctatgata |
281 |
Q |
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| T |
2566537 |
taatctacaaacaacaaaagatggaaattagaaggcgtcactcaattgcttaacagtgtgtttggatggaaaattatagagaaattaaaattctatgata |
2566636 |
T |
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| Q |
282 |
ttgaaatgcttcatttttaattcctttcatttacaaaatttgctatttaggtcaagtagttgaattc |
348 |
Q |
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| T |
2566637 |
ttgaaatgcttcatttttaattcctttcatttacaaaatttgctatttaggtcaagtagttgaattc |
2566703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 452 - 565
Target Start/End: Original strand, 2566808 - 2566921
Alignment:
| Q |
452 |
acttctctttttatgttgggtgtcaagtgagactgaaaatcatttcttcacctaaaaccttataaacattgagtttataggacctcacacttatacgtgc |
551 |
Q |
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| T |
2566808 |
acttctcatcttatgttgggtgtcaagtgagactgaaaatcatatcttcacctaaaaccttataaacattgagtttataggacctcacacttatacgtgc |
2566907 |
T |
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| Q |
552 |
tcaacatcaatatt |
565 |
Q |
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| T |
2566908 |
tcaacatcaatatt |
2566921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 2552954 - 2553088
Alignment:
| Q |
82 |
gattccgggtttgattcattagctggaagaattagtgattattcagatattgaggaactatacttgttgaatcctaaagctttgcttccttgcttaatgg |
181 |
Q |
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||||| || ||||||||||| |||| || || |||||| ||||| ||||||||||||||| |||||||||||||||||| |||| |||||||| ||| |
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| T |
2552954 |
gattcaggatttgattcatttgctgaaaagataagtgatcattcaaatattgaggaactatgtttgttgaatcctaaagctctgctcccttgctttgtgg |
2553053 |
T |
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| Q |
182 |
taatctacaaacaacaaaagatggaaattagaagg |
216 |
Q |
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|||||||||||||| || |||||||||||| |||| |
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| T |
2553054 |
taatctacaaacaaaaatagatggaaattaaaagg |
2553088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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