View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_92 (Length: 385)
Name: NF1139_low_92
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_92 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 224 - 379
Target Start/End: Complemental strand, 40491094 - 40490939
Alignment:
| Q |
224 |
ggttatgcacttcacgtgattagttgattgtgaagaccacacatgcacacgaacgaatatgtttgccttttaccctccaactctctttccagtccattcc |
323 |
Q |
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| T |
40491094 |
ggttatgcacttcaagtgattagttgattgtgaagaccacacatgtacacgaatgaatatgtttgccttttaccctccaactctctttccagtccattcc |
40490995 |
T |
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| Q |
324 |
atccatgcatgcatgcatgctatgaatcagcttctagaccacctagttcatctcac |
379 |
Q |
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| T |
40490994 |
atccatgcatgcatgcatgctttgaatcagcttctagaccacctagtatatctcac |
40490939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 40491313 - 40491241
Alignment:
| Q |
89 |
taaacaaccaaaacaaatatgttttt-ataaaatataatgtaattattacataatcaaaagtaacagcttaca |
160 |
Q |
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| T |
40491313 |
taaacaaccaaaacaaatatattttttataaaatataatgtaattattacatgatgaaaagtaacaacttaca |
40491241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 40479263 - 40479315
Alignment:
| Q |
283 |
tgtttgccttttaccctccaactctctttccagtccattccatccatgcatgc |
335 |
Q |
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| T |
40479263 |
tgtttgccttttaccctccaactctctctccaatccattccatccatgtatgc |
40479315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 16802036 - 16802092
Alignment:
| Q |
93 |
caaccaaaacaaatatgtttttataaaatataatgtaattattacataatcaaaagt |
149 |
Q |
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| T |
16802036 |
caaccaaaacaaataactttttataaaaagtaatgtaattattacttaatcaaaagt |
16802092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 39034538 - 39034499
Alignment:
| Q |
110 |
tttttataaaatataatgtaattattacataatcaaaagt |
149 |
Q |
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| T |
39034538 |
tttttataaaatatagtgtaattattacttaatcaaaagt |
39034499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 30924273 - 30924212
Alignment:
| Q |
90 |
aaacaaccaaaacaaatatgtttttataaaatataatgtaattattacataatcaaaagtaa |
151 |
Q |
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| T |
30924273 |
aaacaaccaaaataagtaaatttttataaaaaatagtgtaattattacttaatcaaaagtaa |
30924212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 39810811 - 39810742
Alignment:
| Q |
89 |
taaacaaccaaaacaaatatgtttttataaaatataatgtaattattacataatcaaaagtaacagctta |
158 |
Q |
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| T |
39810811 |
taaacatccaaaacaaatatgttttcatgataaattgtgtaattattacttgatcaaaagtaacatctta |
39810742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 16831205 - 16831149
Alignment:
| Q |
93 |
caaccaaaacaaatatgtttttataaaatataatgtaattattacataatcaaaagt |
149 |
Q |
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| T |
16831205 |
caaccaaaacaaataactttttataaaaagtagtataattattacttaatcaaaagt |
16831149 |
T |
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