View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_95 (Length: 381)
Name: NF1139_low_95
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_95 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 14610089 - 14609787
Alignment:
| Q |
1 |
ccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatggcctcgaatgttaaaagagcacctccatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14610089 |
ccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcagcctcagccatggcctcgaatgttaaaagagcacctccatca |
14609990 |
T |
|
| Q |
101 |
tctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctctttatcaggatcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609989 |
tctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctctttatcaggatcag |
14609890 |
T |
|
| Q |
201 |
ccgtcgacacaaagaggtcacaaccaggcagatcagatcttcctgtgggatttgtcggggttacaacgtggaatttctcatgaaggacgtctaggtcagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609889 |
ccgtcgacacaaagaggtcacaaccaggcagatcagatcttgctgtgggatttgtcggggttacaacgtggaatttctcatgaaggacgtctaggtcagt |
14609790 |
T |
|
| Q |
301 |
gct |
303 |
Q |
| |
|
||| |
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|
| T |
14609789 |
gct |
14609787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 14598387 - 14598639
Alignment:
| Q |
1 |
ccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatggcctcgaatgttaaaagagcacctccatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || | || ||||| ||||||||| |
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|
| T |
14598387 |
ccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatcgcttcaaaactcaagagagctcctccatca |
14598486 |
T |
|
| Q |
101 |
tctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctctttatcaggatcag |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
14598487 |
tctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctccttttcaggatcag |
14598586 |
T |
|
| Q |
201 |
ccgtcgacacaaagaggtcacaaccaggcagatcagatcttcctgtgggattt |
253 |
Q |
| |
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| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
14598587 |
cagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattt |
14598639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 12194695 - 12194907
Alignment:
| Q |
1 |
ccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatggcctcgaatgttaaaagagcacctccatca |
100 |
Q |
| |
|
|||||| ||||| | ||| || |||||||| |||||||| || || ||||||||||| ||||| ||||||||||| || |||| ||| | ||| || || |
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|
| T |
12194695 |
ccttggttcaatgtcgtgcttccgacaaaaaggaacccacaactccgcaaaacttgctgcctcggccatggcctcaaaagttagaagtgaaccgccgtcg |
12194794 |
T |
|
| Q |
101 |
tctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctctttatcaggatcag |
200 |
Q |
| |
|
|| || |||||||| ||||| || || || || ||||||||||||| || |||||||||||||| || || ||||| || |||||||| || ||||| | |
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| T |
12194795 |
tcagagacataacatgcgagtttatcaacagggtaatcaactgctagaattgaaagaatggtatttgcggtaacaaggggtggctctttttctggatcgg |
12194894 |
T |
|
| Q |
201 |
ccgtcgacacaaa |
213 |
Q |
| |
|
| || |||||||| |
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|
| T |
12194895 |
cagttgacacaaa |
12194907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 29919054 - 29919210
Alignment:
| Q |
59 |
gcctcagccatggcctcgaatgttaaaagagcacctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaa |
158 |
Q |
| |
|
||||||||||| ||||| || |||||||| ||||| |||||||| |||||||| |||| |||||||| |||||||| ||| | ||||| || || | | |
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|
| T |
29919054 |
gcctcagccattgcctcaaaagttaaaagtgcacccccatcatcagaaacatagcaagaaagcttctcaactggatagtcagcagctaaaatcgacaaga |
29919153 |
T |
|
| Q |
159 |
tggtattggcagttacaagaggcggctctttatcaggatcagccgtcgacacaaaga |
215 |
Q |
| |
|
|||| || || || ||||| || || ||||| ||||||||||| || || ||||||| |
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|
| T |
29919154 |
tggtgtttgctgtgacaagtggtggttctttctcaggatcagcagttgaaacaaaga |
29919210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 215
Target Start/End: Complemental strand, 44633051 - 44632913
Alignment:
| Q |
77 |
aatgttaaaagagcacctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaa |
176 |
Q |
| |
|
||||| |||||||| || |||||||| || | ||||||||| | || ||||| |||||||||||||| | || || | |||||| || |||||||||| |
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|
| T |
44633051 |
aatgtcaaaagagctccaccatcatcagacaaataacaagcaactttttccacaggataatcaactgcaaggatagataaaatggtgtttgcagttacaa |
44632952 |
T |
|
| Q |
177 |
gaggcggctctttatcaggatcagccgtcgacacaaaga |
215 |
Q |
| |
|
|||| |||||||| || ||||| || || || ||||||| |
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|
| T |
44632951 |
gaggtggctctttttctggatctgcagttgaaacaaaga |
44632913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 47918178 - 47918105
Alignment:
| Q |
62 |
tcagccatggcctcgaatgttaaaagagcacctccatcatctgaaacataacaagcgagcttctccactggata |
135 |
Q |
| |
|
|||||||| |||| || |||||||| |||||||||||||| |||||||| |||| |||||||| |||||||| |
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|
| T |
47918178 |
tcagccattgccttaaaagttaaaagtgcacctccatcatcagaaacatagcaagaaagcttctcaactggata |
47918105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 41491834 - 41491900
Alignment:
| Q |
8 |
tcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatggcct |
74 |
Q |
| |
|
||||| ||||| || |||||||| |||||||| ||||||||||||||||| ||||| ||||||||| |
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|
| T |
41491834 |
tcaatgttgtgcttccgacaaaatggaacccacaaatcagcaaaacttgctgcctcttccatggcct |
41491900 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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