View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_96 (Length: 381)
Name: NF1139_low_96
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_96 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 373
Target Start/End: Complemental strand, 3982539 - 3982195
Alignment:
| Q |
29 |
atgaattgataagaataattaaaagcacagtttaatcctggaatttgtgttaatttcatttcgatcaaaatcaactacaagaatcaaattgatctgaaaa |
128 |
Q |
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| T |
3982539 |
atgaattgataagaataattaaaagcacagtttaatcctggaatttgtgtgaatttcatttcgatcaaaatcaactacaagaatcaaattgatctgaaaa |
3982440 |
T |
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| Q |
129 |
gcaaacgatgaagtaaattgaaaaagagaacgagaagattatgattccattattgcatgaaaactaattgaactgagtattgaagattgaaacctcttta |
228 |
Q |
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| T |
3982439 |
gcaaacgatgaagtaaattgaaaaagagaacgagaagattatgattccattattgcatgaaaactaattgaactgagtattgaagattgaaacctcctta |
3982340 |
T |
|
| Q |
229 |
gctctgttttcaatgatgctgacaagtaagcttgaaccttctcaaccgtcgtcttccattgttgtgtgctttcaattttcaccacattttgattttcgcg |
328 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3982339 |
gctctgttttcaatgatgctgacaaggaagcttgaaccttctccaccgtcgttttccattgttgtgtgctttcaattttcaccacattttgattttcgcg |
3982240 |
T |
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| Q |
329 |
ccaccttcagtgatactacttataagagcgttggttatatttttg |
373 |
Q |
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| T |
3982239 |
ccaccttcagtgatactacttataagagcgttggttatttttttg |
3982195 |
T |
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