View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_98 (Length: 378)
Name: NF1139_low_98
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_98 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11386426 - 11386204
Alignment:
| Q |
1 |
tttctttagcttaaaagcatgtcatggtacatatttcgttggatgactatctccttaaataatccaactgtcaacctaaaaaccatcaaagaaaccaaat |
100 |
Q |
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| T |
11386426 |
tttctttagcttaaaagcatgtcatggtacatatttcgttggatgattatctccttaaataatccaactgtcaacctaaaaaccatcaaagaaaccaaat |
11386327 |
T |
|
| Q |
101 |
cagaattgaaacaacaaagaattgtagttttgagaataaataacatcagcagaaatggtttggaacgacggcaacatgacgacgatgagaggaagagggg |
200 |
Q |
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| T |
11386326 |
cagaattgaaacaacaaagaattgtagttttgagaataaataacatcagcagaaatggtttgaaacgacggcaacatgacgacgatgagaggaagagggg |
11386227 |
T |
|
| Q |
201 |
agatgttgttaataaggcgatca |
223 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
11386226 |
agatgttgttaataaggtgatca |
11386204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 11363877 - 11363661
Alignment:
| Q |
29 |
acatatttcgttggatgactatctccttaaataatccaactgtcaacctaaaaaccatcaaagaaaccaaatcagaattgaaacaacaaagaattgtagt |
128 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
11363877 |
acatatttcgttggatgattatctccttaaataatccaattgtcaacacaaaaaccagcaaagaaaccaaatcagaattgaaacaagaaagaattgcagt |
11363778 |
T |
|
| Q |
129 |
tttgaga----------------------ataaataacatcagcagaaatggtttggaacgacggcaacatgacgacgatgagaggaagaggggagatgt |
206 |
Q |
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| T |
11363777 |
tttgagaaggctgcaaaaccaagttgaaaatcaataacatcaacagcaatggtttgaaacaacggcaacatgacgacgatgagtggaagaggggagatgt |
11363678 |
T |
|
| Q |
207 |
tgttaataaggcgatca |
223 |
Q |
| |
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||||||||||||||||| |
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| T |
11363677 |
tgttaataaggcgatca |
11363661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 11376604 - 11376389
Alignment:
| Q |
29 |
acatatttcgttggatgactatctccttaaataatccaactgtcaacctaaaaaccatcaaagaaaccaaatcagaattgaaacaacaaagaattgtagt |
128 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
11376604 |
acatatttcgttggatgattatctccttaaataatccaactgtcaacacaaaaaccatcaaagaaaccaaatcataattgaaacaagaaataattgtagt |
11376505 |
T |
|
| Q |
129 |
tttgaga----------------------ataaataacatcagcagaaatggtttggaacgacggcaacatgacgacgatgagaggaagaggggagatgt |
206 |
Q |
| |
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||||||| || |||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11376504 |
tttgagaaggctgcaaaaccaagttgaaaatcaataacatcagcagcaatg-tttgtaacgacggcaacatgacgacgatgagaggaagtggggagatgt |
11376406 |
T |
|
| Q |
207 |
tgttaataaggcgatca |
223 |
Q |
| |
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|||||||||||| |||| |
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| T |
11376405 |
tgttaataaggcaatca |
11376389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 17185798 - 17186014
Alignment:
| Q |
29 |
acatatttcgttggatgactatctccttaaataatccaactgtcaacctaaaaaccatcaaagaaaccaaatcagaattgaaacaacaaagaattgtagt |
128 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
17185798 |
acatatttcgttggatgattatctcctttaataatccaactgtcaacacaaaaaccatcaaagaaaccaaatcagaatagaaacaagaaagaattgtagt |
17185897 |
T |
|
| Q |
129 |
tttgaga----------------------ataaataacatcagcagaaatggtttggaacgacggcaacatgacgacgatgagaggaagaggggagatgt |
206 |
Q |
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||||||| || |||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17185898 |
tttgagaaggctgcaaaaccaagttgaaaatcaataacatcagcagcaatggtttgaaacgacagcaacatgacgacgatgagaggaagaggggagatgt |
17185997 |
T |
|
| Q |
207 |
tgttaataaggcgatca |
223 |
Q |
| |
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||||||||||||||||| |
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| T |
17185998 |
tgttaataaggcgatca |
17186014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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