View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11400_high_1 (Length: 1123)
Name: NF11400_high_1
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_high_1 |
 | |
|
| [»] scaffold0603 (1 HSPs) |
| | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
|
| [»] scaffold0267 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 1054; Significance: 0; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1054; E-Value: 0
Query Start/End: Original strand, 20 - 1108
Target Start/End: Original strand, 4131058 - 4132144
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131058 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
4131157 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccatgcttctcaagcaaactt |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131158 |
agatttcagatttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccatgcttctcaagcaaactt |
4131257 |
T |
|
| Q |
220 |
agtgatgaaaaaacaaattgatgagttggtacttcaatggtctggcactagtccatcaaattcacaaatacaaagtggtgtacttgaacaattgcagcca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131258 |
agtgatgaaaaaacaaattgatgagttggtacttcaatggtctggcactagtccatcaaattcacaaatacaaagtggtgtacttgaacaattgcagcca |
4131357 |
T |
|
| Q |
320 |
tcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattggttgggtagttctttatttggcaacatggtgtgtttgagaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131358 |
tcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattggttgggtagttctttatttggcaacatggtgtgtttgagaa |
4131457 |
T |
|
| Q |
420 |
tctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaagaactctttattagcgagatgaaatcaataaagaggattgg |
519 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131458 |
tctcacattgtgaaaattgtttggtgctgccacccctcggacaattaggtaatctgaaag--ctctttattagcgagatgaaatcaataaagaggattgg |
4131555 |
T |
|
| Q |
520 |
taccgagttcacgggaagtatttctcattcgtttcaaccattttccttcttggagacactagagtttgatacaatgctagagtgggaagattggaagttg |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131556 |
taccgagttcacgggaagtatttctcattcgtttcaaccattttccttcttggagacactagagtttgatacaatgctagagtgggaagattggaagttg |
4131655 |
T |
|
| Q |
620 |
attggaggtacaactgcagagtttcctcgtctaaaacatctgtcactacgacaatgtccaaaactcaaaggaaacttaccccttggacaattacagaatc |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131656 |
attggaggtacaactgcagagtttcctcgtctaaaacgtctgtcactacgacaatgtccaaaactcaaaggaaacttaccccttggacaattacagaatc |
4131755 |
T |
|
| Q |
720 |
ttgaagagatcattcttgaagggatgaaatcattaaagacacttgatactgggttttatggaagtagtagttctcgtttgtttcaaccatttcccttctt |
819 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4131756 |
ttgaagagatcattcttgaagggatgaaatcattaaagacacttgatactgggttttatggaagtagcagttctcgtttgtttcaaccatttcccttctt |
4131855 |
T |
|
| Q |
820 |
gaagactttgagctttacgaatatgcaagagtgggaggaatggaaactggttggaggtgcatctatcgagtttcctagtcttacacgcttgttactatgt |
919 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131856 |
gaagactttgagctttacgaatatgcaagagtgggaggaatggaaactgattggaggtgcatctatcgagtttcctagtcttacacgcttgttactatgt |
4131955 |
T |
|
| Q |
920 |
aattgtccgaaactcaaaggaaatataccaggaaaccttcctagtcttacaagtttgtcacttaaatattgtcccaatctcaaacagatgtcgcccaaca |
1019 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131956 |
aattgtccgaaactcaaaggaaatataccaggaaaccttcctagtcttacaagtttgtcacttaaatattgtcccaatctcaaacagatgtcgcccaaca |
4132055 |
T |
|
| Q |
1020 |
actttccttcccttggtgaacttgagttagaggactgttctctactgatggaggcaaggcattcatcagatgtgttcaaccaattgatg |
1108 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4132056 |
actttccttcccttgttgaacttgagttagaggactgttctctactgatggaggcaaggcattcatcagatgtgttcaaccaattgatg |
4132144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 1072
Target Start/End: Complemental strand, 4091281 - 4090229
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||| | |||| |||||||||||||||||| ||||| ||||||||| ||| || ||| |||||||| |
|
|
| T |
4091281 |
agaggcactcaattgaaggaaatgcccgtacaactctccaaactagaaaatctccaaaccctgtcgagctttgttgttagtaaacaagacattggattga |
4091182 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccatgcttctcaagcaaactt |
219 |
Q |
| |
|
||||| |||| ||||||||| ||| |||| ||| || || ||| |||||||||| |||||||||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
4091181 |
agattgcagatttgggaaaatatttccatttacagggaagactttccatctcacagcttcaaaatgtaactgatccatcccatgcttttcaagcaaattt |
4091082 |
T |
|
| Q |
220 |
agtgatgaaaaaacaaattgatgagttggtacttcaatggtctggcactagtccatcaaattcacaaatacaaagtggtgtacttgaacaattgcagcca |
319 |
Q |
| |
|
| |||||| |||||||| || ||||||||||| |||||| | || || |||||||||||||||||||||| || ||||||| |||| || |
|
|
| T |
4091081 |
ggagatgaagaaacaaatggacgagttggtactaggatggtcagatgataccccttcaaattcacaaatacaaagtgccgtgtttgaacagttgcgtccg |
4090982 |
T |
|
| Q |
320 |
tcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattggttgggtagttctttatttggcaacatggtgtgtttgagaa |
419 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||| |||| |||||| | |
|
|
| T |
4090981 |
tcgacaaatttgaagagtcttaccatctttggctatggtggaaacagctttccaaattggttgggttgttctttatttgacaacatagtgtatttgagga |
4090882 |
T |
|
| Q |
420 |
tctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaagaactctttattagcgagatgaaatcaataaagaggattgg |
519 |
Q |
| |
|
| | ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| || | | | |||||| ||||||| |||| |
|
|
| T |
4090881 |
ttgcgggttgtgaaaattgttcaagactgccacccctcggacaattaggtaatctcaaaaaactctttcttggtaatctaaaatcagtaaagagtgttgg |
4090782 |
T |
|
| Q |
520 |
taccgagttcacgggaagtatttctcattcgtttcaaccattttccttcttggagacactagagtttgatacaatgctagagtgggaagattggaagttg |
619 |
Q |
| |
|
| | |||||| ||||| || || |||||||||||||||| | || |||||||| ||| ||| |||| |||||||| |||||||| |||| |||| |
|
|
| T |
4090781 |
ttctgagttctatggaagggattgtccttcgtttcaaccatttcctttattggagactctaagatttcataccatgctagaatgggaagaatggacgttg |
4090682 |
T |
|
| Q |
620 |
attggaggtacaactgcagagtttcctcgtctaaaacatctgtcactacgacaatgtccaaaactcaaaggaaacttaccccttggacaattacagaatc |
719 |
Q |
| |
|
| |||||||||| || || |||||||||| |||| ||| || || || || ||||| |||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
4090681 |
actggaggtacatctacaaagtttcctcgcctaacacaactttcgctgatacgttgtcctaaactcaagggaaacataccccttggacaattaggtaatc |
4090582 |
T |
|
| Q |
720 |
ttgaagagatcattcttgaagggatgaaatcattaaagacacttgatactgggttttatggaagtagtagttctcgtttgtttcaaccatttcccttctt |
819 |
Q |
| |
|
| |||| ||||| ||| ||||||||||||| | |||||||||| ||||| ||| ||||||||||||||||||| |||| |||||||||||| || ||| |
|
|
| T |
4090581 |
taaaagaactcattattgtagggatgaaatcagtgaagacacttggtactgagttctatggaagtagtagttctcctttgattcaaccatttctctcctt |
4090482 |
T |
|
| Q |
820 |
gaagactttgagctttacgaatatgcaagagtgggaggaatggaaactggttggaggtgcatctatcgagtttcctagtcttacacgcttgttactatgt |
919 |
Q |
| |
|
| ||||| |||| ||| | ||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||||| |||||| ||| ||||| | |
|
|
| T |
4090481 |
ggagactctgaggtttgaggatatgcaagagtgggaggaatggaaactgattggaggtacattgacagagtttcctagtctaacacgcctgtcactatat |
4090382 |
T |
|
| Q |
920 |
aattgtccgaaactcaaaggaaatataccaggaaaccttcctagtcttacaagtttgtcacttaaatattgtcccaatctcaaacagatgtcgcccaaca |
1019 |
Q |
| |
|
|| ||||||||||||||||||| ||||| |||||||||||| ||| ||||||||||||| | |||| ||||||| | || || ||| | | | ||| |
|
|
| T |
4090381 |
aaatgtccgaaactcaaaggaagcataccgggaaaccttcctcgtcatacaagtttgtcagtgaaatgttgtcccgaacttgaagggattgccctcgaca |
4090282 |
T |
|
| Q |
1020 |
actttccttcccttggtgaacttgagttagaggactgttctctactgatggag |
1072 |
Q |
| |
|
|| ||||||||||| |||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
4090281 |
accttccttcccttagtgaacttgagttagaagagtgtcctctactgatggag |
4090229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 20 - 1048
Target Start/End: Complemental strand, 4059544 - 4058522
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |||||| |||||||||||| ||||| ||||||||||||||||| | | |||||| || |||| |
|
|
| T |
4059544 |
agaggtactcgattgaaggaaattcctgtgcaagtatccaaactagaaaatctacaaaccttgtcggactttgttgtcagctctgaggacgtcgggttga |
4059445 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccatgcttctcaagcaaactt |
219 |
Q |
| |
|
||||| |||| | |||||| |||||||||||| || || |||| ||||||| | ||||||||| ||||||| |||||||||||| ||||||||| | |
|
|
| T |
4059444 |
agattgcagatattggaaaatattcccatctacagggaagcctttgcatctcaaagcttcaaaatttaactgacccatcccatgcttttcaagcaaaact |
4059345 |
T |
|
| Q |
220 |
agtgatgaaaaaacaaattgatgagttggtacttcaatggtctggcactagtccatcaaattcacaaatacaaagtggtgtacttgaacaattgcagcca |
319 |
Q |
| |
|
||||||||||||||||||| |||||| ||| |||||||| | ||| ||| ||||||| ||||||||| |||| | ||||| ||||| ||| |
|
|
| T |
4059344 |
gatgatgaaaaaacaaattgacgagttgcaactagaatggtcttactcta------caagttcacaattacaaagtgttgtattagaacagttgcatcca |
4059251 |
T |
|
| Q |
320 |
tcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattggttgggtagttctttatttggcaacatggtgtgtttgagaa |
419 |
Q |
| |
|
|| ||||||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
4059250 |
tctacaaatttgaagaatctcactatctctggctatggtggaaacaactttccaagttggttgggtggttctttatttggcaacatggtgtgtttgaaga |
4059151 |
T |
|
| Q |
420 |
tctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaagaactctttattagcgagatgaaatcaataaagaggattgg |
519 |
Q |
| |
|
| ||| | ||||| || ||| | | |||||||| | || |||||||||||||| | | ||||||||| | ||||||| ||| | ||||| ||||| |
|
|
| T |
4059150 |
tttcagactgtgataactgtccaaggttgccacccttggggcaattaggtaatcttaggaagctctttattgacaagatgaattcagtcaagagtattgg |
4059051 |
T |
|
| Q |
520 |
taccgagttcacgggaagtatttctcattcgtttcaaccattttccttcttggagacactagagtttgatacaatgctagagtgggaagattggaagttg |
619 |
Q |
| |
|
|| || || |||||| ||||| || ||||||||||||| | || |||||||| || || ||||||| |||||||||||| |||| || || ||| |
|
|
| T |
4059050 |
tattgaactctatggaagtggttctcctttgtttcaaccatttcctttattggagactcttgaatttgatatgatgctagagtggaaagaatgtaatttg |
4058951 |
T |
|
| Q |
620 |
attggaggtacaactgcagagtttcctcgtctaaaacatctgtcactacgacaatgtccaaaactcaaaggaaacttaccccttggacaattacagaatc |
719 |
Q |
| |
|
| ||||||||| || || |||||||||||||| || ||||||||| ||| | ||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
4058950 |
acaggaggtacatctacaatgtttcctcgtctaacacgtctgtcactgcgatattgtccgaaactcaaaggaaacataccccttggacaattaagtaatc |
4058851 |
T |
|
| Q |
720 |
ttgaagagatcattcttgaagggatgaaatcattaaagacacttgatactgggttttatggaagtagtagttctcgtttgtttcaaccatttcccttctt |
819 |
Q |
| |
|
| |||| | | ||||||||||| | ||| |||||||||||| || || ||| ||||||||||||| ||||| ||||||||||||||||| || ||| |
|
|
| T |
4058850 |
taaaagaactatatattgaagggatgcactcagtaaagacacttggtagtgagttctatggaagtagtaattctcctttgtttcaaccatttctctcctt |
4058751 |
T |
|
| Q |
820 |
gaagactttgagctttacgaatatgcaagagtgggaggaatggaaactggttggaggtgcatctatcgagtttcctagtcttacacgcttgttactatgt |
919 |
Q |
| |
|
| ||||| | | ||||| | ||||| ||||||||||||||||||| || |||||||| ||||| ||||||||||||||| |||| |||| ||||| | |
|
|
| T |
4058750 |
ggagactctaacctttaggtatatgaaagagtgggaggaatggaagctaattggaggtacatctgcagagtttcctagtcttgcacgtttgtcactattt |
4058651 |
T |
|
| Q |
920 |
aattgtccgaaactcaaaggaaatataccaggaaaccttcctagtcttacaagtttgtcacttaaatattgtcccaatctcaaacagatgtcgcccaaca |
1019 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||| ||| ||||||||||||||||||||| || ||||| ||| |||||| ||||| | ||||| | |
|
|
| T |
4058650 |
tattgtccgaaactcaaaggaaacataccgggcaaccatcccagtcttacaagtttgtcacttgaacattgtttcaaactcaaagagatgacacccaaga |
4058551 |
T |
|
| Q |
1020 |
actttccttcccttggtgaacttgagtta |
1048 |
Q |
| |
|
|| |||||||||| | |||||||||||| |
|
|
| T |
4058550 |
accttccttccctaagagaacttgagtta |
4058522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 289; E-Value: 1e-161
Query Start/End: Original strand, 20 - 983
Target Start/End: Complemental strand, 4079153 - 4078197
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| |||||| |||||||||||| ||||| ||||||||||||||||| | | |||||| || |||| |
|
|
| T |
4079153 |
agaggcactcgattgaatgaaattcctgtgcaagtatccaaactagaaaatctacaaaccttgtcggactttgttgtcagctctgaggacgtcgggttga |
4079054 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccatgcttctcaagcaaactt |
219 |
Q |
| |
|
||||| |||| | |||||| |||||||||||| || || |||| ||||||| | ||||||||| ||||||| |||||||||||| |||| |||| | |
|
|
| T |
4079053 |
agattgcagatattggaaaatattcccatctacagggaagcctttgcatctcaaagcttcaaaatttaactgacccatcccatgcttttcaaacaaaact |
4078954 |
T |
|
| Q |
220 |
agtgatgaaaaaacaaattgatgagttggtacttcaatggtctggcactagtccatcaaattcacaaatacaaagtggtgtacttgaacaattgcagcca |
319 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||||||| ||||| ||| ||||||| ||||||||| |||| | ||||| |||| ||| |
|
|
| T |
4078953 |
gatgatgaaaaaacaaattgacgagttgcaactacaatggtcttacacta------caagttcacaattacaaagtgttgtattagaacagttgcgtcca |
4078860 |
T |
|
| Q |
320 |
tcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattggttgggtagttctttatttggcaacatggtgtgtttgagaa |
419 |
Q |
| |
|
|| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
4078859 |
tcaacaaatttgaagaatctcaccatcactggctatggtggaaacaactttccaagttggttgggtggttctttatttggcaacatggtgtgtttgaaga |
4078760 |
T |
|
| Q |
420 |
tctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaagaactctttattagcgagatgaaatcaataaagaggattgg |
519 |
Q |
| |
|
| ||||| ||||| |||||| | | |||||||| | || |||||||||||||| | | ||||||||| ||||||||| ||| | ||||| ||||| |
|
|
| T |
4078759 |
tttcacactgtgataattgtccaaggttgccacccttggggcaattaggtaatcttaggaagctctttattgtcgagatgaattcagtcaagagtattgg |
4078660 |
T |
|
| Q |
520 |
taccgagttcacgggaagtatttctcattcgtttcaaccattttccttcttggagacactagagtttgatacaatgctagagtgggaagattggaagttg |
619 |
Q |
| |
|
|| || || |||||| ||||| || |||||||||||| | || |||||||| || || |||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
4078659 |
tattgaactctatggaagtggttctcctt-ttttcaaccatttcctttattggagactcttgaatttgatacgatgctagagtggaaagaatggaagttg |
4078561 |
T |
|
| Q |
620 |
attggaggtacaactgcagagtttcctcgtctaaaacatctgtcactacgacaatgtccaaaactcaaaggaaacttaccccttggacaattacagaatc |
719 |
Q |
| |
|
| ||||||||| || |||||||||||||||||| || ||||||||| ||| | ||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
4078560 |
acaggaggtacatctacagagtttcctcgtctaacacgtctgtcactgcgaaattgtccgaaactcaaaggaaacataccccttggacaattaagtaatc |
4078461 |
T |
|
| Q |
720 |
ttgaagagatcattcttgaagggatgaaatcattaaagacacttgatactgggttttatggaagtagtagttctcgtttgtttcaaccatttcccttctt |
819 |
Q |
| |
|
| |||| || | ||||| ||||||||||| |||||||||||| || || ||| |||||||||||| ||||| |||||||||||||||| || ||| |
|
|
| T |
4078460 |
taaaagaactccgtattgaaaggatgaaatcagtaaagacacttggtagtgagttctatggaagtagtgattctccattgtttcaaccatttctctcctt |
4078361 |
T |
|
| Q |
820 |
gaagactttgagctttacgaatatgcaagagtgggaggaatggaaactggttggaggtgcatctatcgagtttcctagtcttacacgcttgttactatgt |
919 |
Q |
| |
|
| ||||| | ||| | |||||||||||||||||||||||| || |||||||| |||||| |||||||||| |||| ||| |||| ||||| | |
|
|
| T |
4078360 |
ggagactctacagttttggggtatgcaagagtgggaggaatggaagctaattggaggtacatctacagagtttcctaatcttgcacatttgtcactatat |
4078261 |
T |
|
| Q |
920 |
aattgtccgaaactcaaaggaaatataccaggaaaccttcctagtcttacaagtttgtcactta |
983 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
4078260 |
ggatgtccgaaactcaagggaaatataccgggaaaccttcctagtcttacatttttgtcactta |
4078197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 20 - 521
Target Start/End: Complemental strand, 4114017 - 4113522
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||| ||||||| ||| |||| | |||| |||| ||||||| |
|
|
| T |
4114017 |
agaggcactcgactgaaggaaattcctgtgcaaatatccaaactagaaaacctccaaaccttgtcgggatttcttgtcaatgttcatgacgttggattgg |
4113918 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccatgcttctcaagcaaactt |
219 |
Q |
| |
|
||||| |||| ||| |||| |||||||| | || |||| ||||| ||||||||||||||| ||| ||||| ||| || || |||||| || |
|
|
| T |
4113917 |
agattgcagatatggtaaaatattcccat------ggaagccttttcatctatgaacttcaaaatgtaattgacccatccgatgtttttctagcaaattt |
4113824 |
T |
|
| Q |
220 |
agtgatgaaaaaacaaattgatgagttggtacttcaatggtctggcactagtccatcaaattcacaaatacaaagtggtgtacttgaacaattgcagcca |
319 |
Q |
| |
|
||||||||||| |||| | | ||| ||||||| ||||| | | || ||| ||||||| |||||||||||||| |||| ||||||| ||||| ||| |
|
|
| T |
4113823 |
ggtgatgaaaaatcaaaataaagagctggtactaaaatggcataacgatactccttcaaatttacaaatacaaagtgttgtatttgaacagttgcatcca |
4113724 |
T |
|
| Q |
320 |
tcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattggttgggtagttctttatttggcaacatggtgtgtttgagaa |
419 |
Q |
| |
|
||| |||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |
|
|
| T |
4113723 |
tcgccaaatttgaagaaactaaccatcattggctatggtggaaacaactttccaaattggttgggtggttctttatttggcaacatggtgtatttgaaga |
4113624 |
T |
|
| Q |
420 |
tctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaagaactctttattagcgagatgaaatcaataaagaggattgg |
519 |
Q |
| |
|
| |||||||||| ||||||||| | |||||||||| || |||||||||||||| ||| | ||||||||| ||||||||||||| | ||||| ||||| |
|
|
| T |
4113623 |
tatcacattgtggaaattgttcatggttgccaccccttgggcaattaggtaatcttaaaaagctctttattcacgagatgaaatcagtcaagagtattgg |
4113524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 623 - 982
Target Start/End: Complemental strand, 4106029 - 4105670
Alignment:
| Q |
623 |
ggaggtacaactgcagagtttcctcgtctaaaacatctgtcactacgacaatgtccaaaactcaaaggaaacttaccccttggacaattacagaatcttg |
722 |
Q |
| |
|
||||||||| || | |||||||||||||||| || ||||||||| || | ||||| ||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
4106029 |
ggaggtacatctactgagtttcctcgtctaacacgtctgtcactgtgaaattgtccgaaactcaaaggaaacataccccttggacaattaagtaatctaa |
4105930 |
T |
|
| Q |
723 |
aagagatcattcttgaagggatgaaatcattaaagacacttgatactgggttttatggaagtagtagttctcgtttgtttcaaccatttcccttcttgaa |
822 |
Q |
| |
|
|||| || | ||||||||||||| || |||||||||||| ||| | | | ||||||||||||| |||| |||||||||||||||| || |||| | |
|
|
| T |
4105929 |
aagaactccgtattgaagggatgaactcggtaaagacacttggtaccgagctctatggaagtagtaattcttctttgtttcaaccatttatctccttgga |
4105830 |
T |
|
| Q |
823 |
gactttgagctttacgaatatgcaagagtgggaggaatggaaactggttggaggtgcatctatcgagtttcctagtcttacacgcttgttactatgtaat |
922 |
Q |
| |
|
|||| || ||| | ||||||||||||||||||| ||||| || |||||||| |||||| ||||||| ||||||| ||| |||| ||||| ||| |
|
|
| T |
4105829 |
gactctgcagtttggggatatgcaagagtgggaggagtggaagctaattggaggtacatctacagagtttcttagtcttgcacatttgtcactatataaa |
4105730 |
T |
|
| Q |
923 |
tgtccgaaactcaaaggaaatataccaggaaaccttcctagtcttacaagtttgtcactt |
982 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
4105729 |
tgtccaaaactcaagggaaatataccgggaaaccttcctagtcttacatttttgtcactt |
4105670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 279 - 629
Target Start/End: Original strand, 5967181 - 5967534
Alignment:
| Q |
279 |
attcacaaatacaaagtggtgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattg |
378 |
Q |
| |
|
|||||||||| || |||| |||||||||||| |||| || || ||||||||||| |||||||||||||| |||||||| |||| ||||||||| ||||| |
|
|
| T |
5967181 |
attcacaaattcagagtgttgtacttgaacatttgcgaccctcaacaaatttgaaaagtctcaccatcaaaggctatgggggaatcaactttccgaattg |
5967280 |
T |
|
| Q |
379 |
gttgggtagttctttatttggcaacatggtgtgtttgagaatctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaa |
478 |
Q |
| |
|
||| ||| ||| |||||| ||||||| ||| ||| || ||||| |||||| |||||| ||| |||||||| |||||||| |||||||||||| |
|
|
| T |
5967281 |
gttaggtgattcgttatttaccaacatgatgtatttaaggatctcgaattgtggtgattgtttatggcttccaccccttggacaattgggtaatctgaaa |
5967380 |
T |
|
| Q |
479 |
gaactctttattagcgagatgaaatcaataaagaggattggtaccgagttcacgggaag---tatttctcattcgtttcaaccattttccttcttggaga |
575 |
Q |
| |
|
|||||| ||||| | |||| |||| ||| ||| |||||||| |||||| ||||| || ||||| ||| |||||||||||| ||| |||||||| |
|
|
| T |
5967381 |
gaactcattattgaagggatgcaatccatacagataattggtactgagttctatggaagtgatagttctccttcatttcaaccatttccctccttggaga |
5967480 |
T |
|
| Q |
576 |
cactagagtttgatacaatgctagagtgggaagattggaagttgattggaggta |
629 |
Q |
| |
|
| ||| | ||||| | |||| |||||||||||| ||||| ||||||||||||| |
|
|
| T |
5967481 |
ctctacattttgagaatatgcaagagtgggaagagtggaacttgattggaggta |
5967534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 623 - 884
Target Start/End: Complemental strand, 4122750 - 4122489
Alignment:
| Q |
623 |
ggaggtacaactgcagagtttcctcgtctaaaacatctgtcactacgacaatgtccaaaactcaaaggaaacttaccccttggacaattacagaatcttg |
722 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || |||||||| ||| | ||||||| ||||||||||||| ||||||||||||||||| ||| | |
|
|
| T |
4122750 |
ggaggtacatctgcagagtttcctcgtctaacacggctgtcactgcgaaattgtccaagactcaaaggaaacataccccttggacaattaagtaatttaa |
4122651 |
T |
|
| Q |
723 |
aagagatcattcttgaagggatgaaatcattaaagacacttgatactgggttttatggaagtagtagttctcgtttgtttcaaccatttcccttcttgaa |
822 |
Q |
| |
|
| || || | ||||||||||||| ||| |||||||||||| || || ||| || |||||||||| ||||| ||||||||||||||||| || ||| | |
|
|
| T |
4122650 |
aggaactccgtattgaagggatgaactcagtaaagacacttggtagtgagttgtaaggaagtagtaattctcctttgtttcaaccatttctctctttgga |
4122551 |
T |
|
| Q |
823 |
gactttgagctttacgaatatgcaagagtgggaggaatggaaactggttggaggtgcatcta |
884 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| || |||||||| |||||| |
|
|
| T |
4122550 |
gactttacagtttagagatatgcaagagtgggaggaatggaagctaattggaggtacatcta |
4122489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 298 - 484
Target Start/End: Original strand, 2920912 - 2921098
Alignment:
| Q |
298 |
tgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattggttgggtagttctttattt |
397 |
Q |
| |
|
|||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||||| || || |||| |
|
|
| T |
2920912 |
tgtacttgaacatttgcaaccttcaacaaatttgaaaagtctcaccatcaaaggctatggtggaatcagctttccaaattggttgggtgatttttcattt |
2921011 |
T |
|
| Q |
398 |
ggcaacatggtgtgtttgagaatctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaagaactc |
484 |
Q |
| |
|
|||||||||||| ||| || |||||| ||||||| ||||||| ||| ||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
2921012 |
agcaacatggtgtatttaaggatctcaaattgtgataattgtttatggcttccaccgctcggtcaattgagtaatctgaaagaactc |
2921098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 279 - 655
Target Start/End: Complemental strand, 11496364 - 11495985
Alignment:
| Q |
279 |
attcacaaatacaaagtggtgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattg |
378 |
Q |
| |
|
|||||||| | ||||| | |||||||||| | |||| || || ||||||||||| |||||||||||||| |||||||||||| ||| | |||||||||| |
|
|
| T |
11496364 |
attcacaagttcaaagggctgtacttgaaaatttgcgaccctcaacaaatttgaaaagtctcaccatcaaaggctatggtggatacagcattccaaattg |
11496265 |
T |
|
| Q |
379 |
gttgggtagttctttatttggcaacatggtgtgtttgagaatctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaa |
478 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||| || ||||| ||| || || ||| ||| |||||||| |||||||| || ||| ||||| |
|
|
| T |
11496264 |
gttgggtgattttttatttggcaacatggtgtatttaaggatctcgaatttcgataagtgtatatggcttccaccccttggacaattgggaaatttgaaa |
11496165 |
T |
|
| Q |
479 |
gaactctttattagcgagatgaaatcaataaagaggattggtaccgagttcacgggaag---tatttctcattcgtttcaaccattttccttcttggaga |
575 |
Q |
| |
|
|||||| ||||| |||| ||||||||||| |||| || |||||| ||||| || ||||| ||| |||||||||||| ||| |||||||| |
|
|
| T |
11496164 |
gaactcattattgattcgatgctttcaataaagagtgttggcacagagttctacggaagtgatagttctccttcatttcaaccatttccctccttggaga |
11496065 |
T |
|
| Q |
576 |
cactagagtttgatacaatgctagagtgggaagattggaagttgattggaggtacaactgcagagtttcctcgtctaaaa |
655 |
Q |
| |
|
| ||| | ||||| |||| ||| ||||| || ||||| || |||||||||||||| || | |||||| |||||||| |
|
|
| T |
11496064 |
ctctacactttgaggatatgccagaatgggaggaatggaacttcattggaggtacaacgacaaattttcctagtctaaaa |
11495985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 279 - 478
Target Start/End: Complemental strand, 11489889 - 11489690
Alignment:
| Q |
279 |
attcacaaatacaaagtggtgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattg |
378 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||| || || ||||||||||| |||||| |||| || ||||| ||||| |||||||||||||||| |
|
|
| T |
11489889 |
attcacaaactcaaagtgttgtacttgaacatttgcaaccttcaacaaatttgaaaagtctcgccataaaaggctactgtggagacaactttccaaattg |
11489790 |
T |
|
| Q |
379 |
gttgggtagttctttatttggcaacatggtgtgtttgagaatctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaa |
478 |
Q |
| |
|
| ||||| || ||||||| |||||||||||| || || ||||| ||||||| |||||| ||| |||||||| ||| |||| |||||||||||| |
|
|
| T |
11489789 |
gatgggtgattttttatttagcaacatggtgtacttaaggatctcgaattgtgacgattgtttatggcttccaccccttggaaaattgggtaatctgaaa |
11489690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 282 - 410
Target Start/End: Complemental strand, 910380 - 910252
Alignment:
| Q |
282 |
cacaaatacaaagtggtgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattggtt |
381 |
Q |
| |
|
||||||| |||||| |||||||||||| |||| || |||||||||||||||| |||| || ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
910380 |
cacaaattcaaagttttgtacttgaacagttgcgaccctcgacaaatttgaagaatctcggtattcatggctatggtggaaccaactttccaaaatggtt |
910281 |
T |
|
| Q |
382 |
gggtagttctttatttggcaacatggtgt |
410 |
Q |
| |
|
|||| || || ||||| |||||||||| |
|
|
| T |
910280 |
gggtgattattcctttggaaacatggtgt |
910252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 766 - 949
Target Start/End: Complemental strand, 3911942 - 3911759
Alignment:
| Q |
766 |
tactgggttttatggaagtagtagttctcgtttgtttcaaccatttcccttcttgaagactttgagctttacgaatatgcaagagtgggaggaatggaaa |
865 |
Q |
| |
|
||||| |||||| ||||| | |||||| | || |||||||||||||||| |||| | | |||| | || | |||||| ||| ||| |||||||||| |
|
|
| T |
3911942 |
tactgagttttacggaagcattagttccctttcctttcaaccatttccctccttggaaattttgtgtttcgaggatatgccagaatggaaggaatggaac |
3911843 |
T |
|
| Q |
866 |
ctggttggaggtgcatctatcgagtttcctagtcttacacgcttgttactatgtaattgtccgaaactcaaaggaaatatacca |
949 |
Q |
| |
|
|| |||||||| | |||| |||||||||||||| | || ||||| |||||| |||||||||||||||||||||| |||||| |
|
|
| T |
3911842 |
atgattggaggtaccactattgagtttcctagtctaaggcgtttgtttctatgtgattgtccgaaactcaaaggaaacatacca |
3911759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 275 - 378
Target Start/End: Complemental strand, 7489805 - 7489702
Alignment:
| Q |
275 |
tcaaattcacaaatacaaagtggtgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaa |
374 |
Q |
| |
|
||||| ||| |||| ||||||| |||||||||| | |||| || ||||||| |||||| |||||||||||| | ||||||||||||| || |||||| | |
|
|
| T |
7489805 |
tcaaactcataaattcaaagtgttgtacttgaatatttgcgaccctcgacaagtttgaaaagtctcaccatcgaaggctatggtggaatcatctttccta |
7489706 |
T |
|
| Q |
375 |
attg |
378 |
Q |
| |
|
|||| |
|
|
| T |
7489705 |
attg |
7489702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 11490139 - 11490049
Alignment:
| Q |
31 |
attgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattgaag |
121 |
Q |
| |
|
||||| ||| |||||||| |||||| ||| |||||||||| |||| |||||||||||||||||||| || | ||| | |||||||||||| |
|
|
| T |
11490139 |
attgagggagatgcctgtacaaatagccaaactagaaaatttccatactttgtcggactttgttgtcggcaagcagaatgatggattgaag |
11490049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 729 - 877
Target Start/End: Original strand, 5967385 - 5967533
Alignment:
| Q |
729 |
tcattcttgaagggatgaaatcattaaagacacttgatactgggttttatggaagtagtagttctcgtttgtttcaaccatttcccttcttgaagacttt |
828 |
Q |
| |
|
||||| ||||||||||| |||| || ||| | ||| ||||| ||| ||||||||| |||||||| || |||||||||||||||| |||| ||||| | |
|
|
| T |
5967385 |
tcattattgaagggatgcaatccatacagataattggtactgagttctatggaagtgatagttctccttcatttcaaccatttccctccttggagactct |
5967484 |
T |
|
| Q |
829 |
gagctttacgaatatgcaagagtgggaggaatggaaactggttggaggt |
877 |
Q |
| |
|
||| |||||||||||||||||| || ||||| || |||||||| |
|
|
| T |
5967485 |
acattttgagaatatgcaagagtgggaagagtggaacttgattggaggt |
5967533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 729 - 813
Target Start/End: Complemental strand, 11489685 - 11489601
Alignment:
| Q |
729 |
tcattcttgaagggatgaaatcattaaagacacttgatactgggttttatggaagtagtagttctcgtttgtttcaaccatttcc |
813 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| ||| ||||| ||| ||||||||| | |||||| ||| |||||||||||||| |
|
|
| T |
11489685 |
tcattattgaagggatgcaatcagtacagacaattggtactgagttctatggaagtgatggttctcctttatttcaaccatttcc |
11489601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 257; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 280 - 1032
Target Start/End: Original strand, 13934772 - 13935524
Alignment:
| Q |
280 |
ttcacaaatacaaagtggtgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattgg |
379 |
Q |
| |
|
||||||| ||||||||| |||| | ||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
13934772 |
ttcacaattacaaagtgttgtattagaacagttgcgtccatcgacaaatttgaagaatctcaccatcactggctatggtggaaacaactttccaagttgg |
13934871 |
T |
|
| Q |
380 |
ttgggtagttctttatttggcaacatggtgtgtttgagaatctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaag |
479 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| || ||||| ||||| |||||| | | |||||||| | || |||||||||||||| | |
|
|
| T |
13934872 |
ttgggtggttctttattttgcaacatggtgtgtttgaagatttcacactgtgataattgtccaaggttgccacccttggggcaattaggtaatcttagga |
13934971 |
T |
|
| Q |
480 |
aactctttattagcgagatgaaatcaataaagaggattggtaccgagttcacgggaagtatttctcattcgtttcaaccattttccttcttggagacact |
579 |
Q |
| |
|
| ||||||||| | ||||||||||| | ||||| ||||||| || || |||||| ||||| || ||||||||||||| | || |||||||| || |
|
|
| T |
13934972 |
agctctttattgacaagatgaaatcagtcaagagtattggtattgaactctatggaagtggttctcctttgtttcaaccatttcctttattggagactct |
13935071 |
T |
|
| Q |
580 |
agagtttgatacaatgctagagtgggaagattggaagttgattggaggtacaactgcagagtttcctcgtctaaaacatctgtcactacgacaatgtcca |
679 |
Q |
| |
|
|| |||||||| |||||||||||| |||| |||||||||| ||||||||| || |||||||||||||||||| | ||||||||| ||| | ||||| |
|
|
| T |
13935072 |
tgaatttgatacgatgctagagtggaaagaatggaagttgacaggaggtacatctacagagtttcctcgtctaacatgtctgtcactgcgaaattgtccg |
13935171 |
T |
|
| Q |
680 |
aaactcaaaggaaacttaccccttggacaattacagaatcttgaagagatcattcttgaagggatgaaatcattaaagacacttgatactgggttttatg |
779 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| |||| || | ||||||||||||| ||| |||||||| ||| || || ||| |||| |
|
|
| T |
13935172 |
aaactcaaaggaaacataccccttggacaattaagtaatctaaaagaactccgtattgaagggatgaactcagtaaagacatttggtagtgagttctatg |
13935271 |
T |
|
| Q |
780 |
gaagtagtagttctcgtttgtttcaaccatttcccttcttgaagactttgagctttacgaatatgcaagagtgggaggaatggaaactggttggaggtgc |
879 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| || |||| ||||| | |||| | ||||||||||||||||||||||||| || |||||||| | |
|
|
| T |
13935272 |
gaagtagtaattctcctttgtttcaaccatttctctccttggagactctacagtttagggatatgcaagagtgggaggaatggaagctaattggaggtac |
13935371 |
T |
|
| Q |
880 |
atctatcgagtttcctagtcttacacgcttgttactatgtaattgtccgaaactcaaaggaaatataccaggaaaccttcctagtcttacaagtttgtca |
979 |
Q |
| |
|
||||| ||||||||||||||| ||| |||| ||||| | |||||||||||||||||||| ||||| || |||| |||||||||||||||| ||||| |
|
|
| T |
13935372 |
atctacagagtttcctagtctttcacatttgtcactatatggatgtccgaaactcaaaggaaacatacccggcaaccatcctagtcttacaagtctgtca |
13935471 |
T |
|
| Q |
980 |
cttaaatattgtcccaatctcaaacagatgtcgcccaacaactttccttccct |
1032 |
Q |
| |
|
||| ||||||||| ||| |||||| |||||| ||||| ||| |||||||||| |
|
|
| T |
13935472 |
cttgaatattgtctcaaactcaaagggatgtcacccaagaaccttccttccct |
13935524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 13934485 - 13934727
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
|||||||||| |||| | ||||| |||| ||||||| | |||||||||||| ||||| ||||| ||||||||||| | |||||| || |||| |
|
|
| T |
13934485 |
agaggcactccattgtatgaaattcctgcacaaatattaaaactagaaaatctacaaaccttgtctgactttgttgtcaactctgaggacgtcgggttga |
13934584 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccatgcttctcaagcaaactt |
219 |
Q |
| |
|
||||| |||| |||||||| |||||||||||| || | |||| ||||||| | ||||||||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
13934585 |
agattgcagatatgggaaaatattcccatctacaggggagccttttcatctcaaagcttcaaaatgtaactgacccatcccatgcttttcaagcaaattt |
13934684 |
T |
|
| Q |
220 |
agtgatgaaaaaacaaattgatgagttggtacttcaatggtct |
262 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
13934685 |
gatgatgaaaaaacaaattgacgagttgcaactacaatggtct |
13934727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 323 - 655
Target Start/End: Original strand, 17313148 - 17313483
Alignment:
| Q |
323 |
acaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattggttgggtagttctttatttggcaacatggtgtgtttgagaatct |
422 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||||||| || | ||||||||||||||||| || |||||||||||||||||||| ||| || |||| |
|
|
| T |
17313148 |
acaaatttgaaaagtctcatcatcaaaggctatggtggattcagcattccaaattggttgggtgattttttatttggcaacatggtgtatttaaggatct |
17313247 |
T |
|
| Q |
423 |
cacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaagaactctttattagcgagatgaaatcaataaagaggattggtac |
522 |
Q |
| |
|
| ||||||| || ||| ||| ||| |||| ||| |||| |||||| ||||||||||| ||||| |||| ||||||||||| ||||||| |
|
|
| T |
17313248 |
cgaattgtgataagtgtatatggcttccatcccttggaaaattgggtaatttgaaagaactcattattgattcgatgctttcaataaagagtgttggtac |
17313347 |
T |
|
| Q |
523 |
cgagttcacgggaag---tatttctcattcgtttcaaccattttccttcttggagacactagagtttgatacaatgctagagtgggaagattggaagttg |
619 |
Q |
| |
|
|||||| ||||| || ||| ||| |||||||||||| ||| ||||||||| ||| | ||||| |||| ||| ||||| || ||||| || |
|
|
| T |
17313348 |
agagttctacggaagtgataaccctccttcttttcaaccatttccctccttggagactctacactttgaggatatgccagaatgggaggagtggaacatg |
17313447 |
T |
|
| Q |
620 |
attggaggtacaactgcagagtttcctcgtctaaaa |
655 |
Q |
| |
|
||||||||||||||| || | |||||| |||||||| |
|
|
| T |
17313448 |
attggaggtacaactacaaattttcctagtctaaaa |
17313483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 78; Significance: 9e-36; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 275 - 655
Target Start/End: Complemental strand, 3578 - 3195
Alignment:
| Q |
275 |
tcaaattcacaaatacaaagtggtgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaa |
374 |
Q |
| |
|
||||||||||| || ||||||| |||||||||||| ||||| || || ||||||||||| ||||| |||||||| ||||||||||||| | |||||| | |
|
|
| T |
3578 |
tcaaattcacatattcaaagtgttgtacttgaacatttgcaaccctcaacaaatttgaaaagtcttaccatcaaaggctatggtggaattagctttccga |
3479 |
T |
|
| Q |
375 |
attggttgggtagttctttatttggcaacatggtgtgtttgagaatctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatct |
474 |
Q |
| |
|
||||||| ||| ||| |||||| |||||||||||| ||| || |||||| ||||| |||||| ||| ||||| || || ||||| |||||||| |
|
|
| T |
3478 |
attggtttggtgattccttatttagcaacatggtgtatttaaggatctcaaattgtagtgattgtttatggcttccacctcttgggcaattgggtaatct |
3379 |
T |
|
| Q |
475 |
gaaagaactctttattagcgagatgaaatcaataaagaggattggtaccgagttcacgggaagt---atttctcattcgtttcaaccattttccttcttg |
571 |
Q |
| |
|
|||| ||||| ||||| |||||| ||||| || ||| |||||||| |||||| |||||| |||| ||| |||||||||||| ||| |||| |
|
|
| T |
3378 |
gaaaaaactcattattgaagagatgcaatcagtagagataattggtactgagttctatggaagtgactgttcttcttcatttcaaccatttccctccttg |
3279 |
T |
|
| Q |
572 |
gagacactagagtttgatacaatgctagagtgggaagattggaagttgattggaggtacaactgcagagtttcctcgtctaaaa |
655 |
Q |
| |
|
||||| ||| | ||||| | |||| ||||||||| || ||||| |||||||||||||| | | || |||||||| ||||||| |
|
|
| T |
3278 |
gagactctacattttgagaatatgcaagagtgggaggagtggaacttgattggaggtacgaataaagggtttcctcttctaaaa |
3195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 279 - 529
Target Start/End: Original strand, 16448147 - 16448397
Alignment:
| Q |
279 |
attcacaaatacaaagtggtgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattg |
378 |
Q |
| |
|
||||| |||||||||||| |||||||||| | |||| || |||||||||||||| |||||||||||||| ||||||||||||| || |||||||||||| |
|
|
| T |
16448147 |
attcaaaaatacaaagtgttgtacttgaaaatttgcgaccctcgacaaatttgaaaagtctcaccatcaaaggctatggtggaatcagctttccaaattg |
16448246 |
T |
|
| Q |
379 |
gttgggtagttctttatttggcaacatggtgtgtttgagaatctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaa |
478 |
Q |
| |
|
||||||| | ||||||| |||||||| ||| ||| || ||||| ||||||| ||||| ||| || ||||| ||||| || |||||||| ||| |
|
|
| T |
16448247 |
gttgggtgatattttatttagcaacatgatgtctttaaggatctcgaattgtgatgcttgtttatggcttcctccccttggacagttgggtaatctaaaa |
16448346 |
T |
|
| Q |
479 |
gaactctttattagcgagatgaaatcaataaagaggattggtaccgagttc |
529 |
Q |
| |
|
|| ||| |||||| | |||| |||||||| ||| |||||||| |||||| |
|
|
| T |
16448347 |
gagctcattattaaagggatgcaatcaatacagacaattggtactgagttc |
16448397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 275 - 490
Target Start/End: Original strand, 5989887 - 5990102
Alignment:
| Q |
275 |
tcaaattcacaaatacaaagtggtgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaa |
374 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| |||| || || ||||||||||| | |||||||||||| || |||||||||| || |||| ||| |
|
|
| T |
5989887 |
tcaaattcacaaattcaaagtgttgtacttgaacatttgcgaccctcaacaaatttgaaaaatctcaccatcaaagggtatggtggaatcagcttttcaa |
5989986 |
T |
|
| Q |
375 |
attggttgggtagttctttatttggcaacatggtgtgtttgagaatctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatct |
474 |
Q |
| |
|
||||||| ||| |||||||||| | || ||||||| ||| || |||||| |||||| |||||| ||| || ||||| |||||||| |||||||| |
|
|
| T |
5989987 |
attggttaggtgattctttatttagaaatatggtgtatttaaggatctcaagttgtgatcattgtttatggcttcccccccttggacaattgggtaatct |
5990086 |
T |
|
| Q |
475 |
gaaagaactctttatt |
490 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
5990087 |
gaaaaaactcattatt |
5990102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 293 - 490
Target Start/End: Original strand, 18389400 - 18389597
Alignment:
| Q |
293 |
agtggtgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattggttgggtagttctt |
392 |
Q |
| |
|
|||| ||||||| |||| ||||| || || ||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||||| | | |
|
|
| T |
18389400 |
agtgctgtacttaaacatttgcaaccttcaacaaatttgaaaagtctcaccatcaaaggctatggtggaaccagctttccaaattggttgggtgataatg |
18389499 |
T |
|
| Q |
393 |
tatttggcaacatggtgtgtttgagaatctcacattgtgaaaattgttcggtgctgccacccctcggacaattaggtaatctgaaagaactctttatt |
490 |
Q |
| |
|
||||||| |||||| ||| ||| ||||||||| |||||| |||||| ||| ||| |||| |||||||| |||||| ||||||||||| ||||| |
|
|
| T |
18389500 |
tatttggaaacatgttgtatttaagaatctcaaattgtgtcaattgtctatggcttccatcccttggacaattgggtaatttgaaagaactcgttatt |
18389597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 766 - 949
Target Start/End: Complemental strand, 18774 - 18591
Alignment:
| Q |
766 |
tactgggttttatggaagtagtagttctcgtttgtttcaaccatttcccttcttgaagactttgagctttacgaatatgcaagagtgggaggaatggaaa |
865 |
Q |
| |
|
||||| |||||| ||||| | |||||| | || |||||||||||||||| |||| | | |||| | || | |||||| ||| ||| |||||||||| |
|
|
| T |
18774 |
tactgagttttacggaagcattagttccctttcctttcaaccatttccctccttggaaattttgtgtttcgaggatatgccagaatggaaggaatggaac |
18675 |
T |
|
| Q |
866 |
ctggttggaggtgcatctatcgagtttcctagtcttacacgcttgttactatgtaattgtccgaaactcaaaggaaatatacca |
949 |
Q |
| |
|
|| |||||||| | |||| |||||||||||||| | || ||||| |||||| |||||||||||||||||||||| |||||| |
|
|
| T |
18674 |
atgattggaggtaccactattgagtttcctagtctaaggcgtttgtttctatgtgattgtccgaaactcaaaggaaacatacca |
18591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 410
Target Start/End: Original strand, 20093 - 20205
Alignment:
| Q |
298 |
tgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattggttgggtagttctttattt |
397 |
Q |
| |
|
||||||| ||||| | || || || ||||||||||||| |||||||||||| || || ||||||| | |||||| |||||||||||| ||| |||||| |
|
|
| T |
20093 |
tgtacttcaacaacttcaaccttcaacaaatttgaagaatctcaccatcaaaggttacggtggaacaagctttccgaattggttgggtgattcattattt |
20192 |
T |
|
| Q |
398 |
ggcaacatggtgt |
410 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20193 |
agcaacatggtgt |
20205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 19800 - 19864
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtc |
84 |
Q |
| |
|
||||| |||| ||||||||| ||||| || |||||| |||||||| ||||||| ||||||||||| |
|
|
| T |
19800 |
agaggtactcaattgaaggagatgccagtacaaataaccagactacaaaatcttcaaactttgtc |
19864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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