View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11400_high_17 (Length: 461)

Name: NF11400_high_17
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11400_high_17
NF11400_high_17
[»] chr5 (8 HSPs)
chr5 (18-443)||(18192233-18192663)
chr5 (19-190)||(18196767-18196939)
chr5 (243-419)||(18187459-18187648)
chr5 (48-190)||(18187248-18187394)
chr5 (274-340)||(18229109-18229175)
chr5 (349-419)||(18197135-18197205)
chr5 (128-190)||(18228965-18229028)
chr5 (243-321)||(18197013-18197089)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 18192233 - 18192663
Alignment:
Q  18 aagaaaaacactatctttacaattacgtgggtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcataag-cttccacttttct 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||||||| ||  |||||||||||||    
T  18192233 aagaaaaacactatctttacaattacgtgggtgaatccagctgcacactaagatctcacag-ccacagcaatttgtggctcacaaaacttccacttttct 18192331  T
Q  117 gatgtggcattgctttccaactttttgacctttataaaacttcttcacataaacacataaaccattgtacctccnnnnnnnnnnnnnnnnn--cttttct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||                   |||||||    
T  18192332 gatgtggcattgctttccaactttttgacctttataaaacttcttcacataaacacataaaccatagtacctccctctctctctctttctctccttttct 18192431  T
Q  215 tcattatcaagtaaacagaacnnnnnnncaacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaac 314  Q
    ||| |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18192432 tcagtatcaagtaaacagaacaaaaaaacaacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaac 18192531  T
Q  315 aatttttcaaacacgcaacaccgatgattattcctcagagtttt---ctcctcttgctcatgaagatttctctgatcatagtcttcattcatctttatct 411  Q
    |||||||||||||||||||||||| ||||||||||| |||||||   ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18192532 aatttttcaaacacgcaacaccgacgattattcctcggagttttctcctcctcttggtcatgaagatttctctgatcatagtcttcattcatctttatct 18192631  T
Q  412 tcatcttcatcttctccaaacaaacacgattc 443  Q
    ||||||||||||||||||||| |||| |||||    
T  18192632 tcatcttcatcttctccaaacgaacatgattc 18192663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 18196767 - 18196939
Alignment:
Q  19 agaaaaacactatctttacaattacgtgggtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcataag-cttccacttttctg 117  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||    
T  18196767 agaacaacactatctttacaattaagtgtgtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcacaaaacttccacttttctg 18196866  T
Q  118 atgtggcattgctttccaactttttgacctttataaaacttcttcacataaacacataaaccattgtacctcc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18196867 atgtggcattgctttccaactttttgacctttataaaacttcttcacagaaacacataaaccattgtacctcc 18196939  T

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Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 243 - 419
Target Start/End: Original strand, 18187459 - 18187648
Alignment:
Q  243 caacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaacaatttttcaaacacgcaacaccg----- 337  Q
    |||||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||         
T  18187459 caacaaaaacttcttcaacatatatacctgaga--tgactaatgattcaaccatgaagcttttcgggagaaccatttttcaaaaacacaacaccgatgtt 18187556  T
Q  338 -------atgattattcctcagagttttctcc---tcttgctcatgaagatttctctgatcatagtcttcattcatctttatcttcatcttc 419  Q
           |||||| ||||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18187557 cctaccaatgattcttcctcagaattttctcctcatcttgctcatgaagatttctctgatcatagtcttcattcatctttatcttcatcttc 18187648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 18187248 - 18187394
Alignment:
Q  48 gtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcataag-cttccacttttctgatgtggcattgctttcc---aactttttg 143  Q
    ||||||||| ||| |||||||||||||| |||||| || ||||||||||||| ||  ||| | ||||||||||||||| | ||||||    |||||||||    
T  18187248 gtgaatccagctgaacactaagatctcataggccaaaacaatttgtggctcacaaaactttcccttttctgatgtggcttggctttcttctaactttttg 18187347  T
Q  144 acctttataaaacttcttcacataaacacataaaccattgtacctcc 190  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||    
T  18187348 acctatataaaacctcttcacataaacacataaaccattgtacctcc 18187394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 18229109 - 18229175
Alignment:
Q  274 gagatgactaatgattcaaccataaagcttttcgggagaacaatttttcaaacacgcaacaccgatg 340  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  18229109 gagatgactaatgattcaaccataaagcttttcgggagaaccatttttcaaacacacaacaccgatg 18229175  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 18197135 - 18197205
Alignment:
Q  349 tcagagttttctcctcttgctcatgaagatttctctgatcatagtcttcattcatctttatcttcatcttc 419  Q
    ||||| |||||||| ||| ||||||||||||| ||| |||||||||||||||||||| | ||||| |||||    
T  18197135 tcagaattttctccgcttcctcatgaagatttatctcatcatagtcttcattcatctatgtcttcctcttc 18197205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 18228965 - 18229028
Alignment:
Q  128 gctttccaactttttgacctttataaaa---cttcttcacataaacacataaaccattgtacctcc 190  Q
    |||||| ||||||||||||||||| |||   |||||||||||||||||  ||||||||||||||||    
T  18228965 gctttctaactttttgacctttatgaaacctcttcttcacataaacac--aaaccattgtacctcc 18229028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 18197013 - 18197089
Alignment:
Q  243 caacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaacaattttt 321  Q
    |||||||||||| ||| ||| ||||||| ||||  ||| |||| |||||||||||| |||||| |||||||| ||||||    
T  18197013 caacaaaaacttattctacagatatacccgaga--tgattaataattcaaccataacgctttttgggagaacgattttt 18197089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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