View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_high_20 (Length: 441)
Name: NF11400_high_20
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 44709590 - 44710013
Alignment:
| Q |
1 |
aatgatttttcttgtggtgtgggttatgttatttggagcaaatgatgggttctcaggagatcaaatctcgcaaataactgtggctttcaaccattttggg |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44709590 |
aatgatttttcttgtggtgtaggttatgttatttggagcaaatgatgggttctcaggagatcaaatctcgcaaataactgtggcttttaaccattttggg |
44709689 |
T |
|
| Q |
101 |
aaaggattgatacagaggatgccaaggtgtagatggggattctttcatattgttaacaatgactacactcattggcttatgtatgccattggtggtagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44709690 |
aaaggattgatacagaggatgccaaggtgtagatggggattctttcatattgttaacaatgactacactcattggcttatgtatgccattggtggtagca |
44709789 |
T |
|
| Q |
201 |
cacatcccaccatactcagccagggtaaccggtttattgctcctcctaacccaaatgcaaaagaggtatataaagagcgacatatatataagccatgagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44709790 |
cacatcccaccatactcagccagggtaaccggtttattgctcctcctaacccaaatgcaaaagaggtatataaagagcgac----atataagccatgagt |
44709885 |
T |
|
| Q |
301 |
tcagtctaatataaatgttttatttgcttcta---attctacaaattgaaaatgatttaggtgacaaagagggattatgcacctgaaagtgtatggaagg |
397 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44709886 |
tcagtctaatataaatgttttattttcttctaattattctacaaattgaaaatgatttaggtgacaaagagggattatgcacctgaaagtgtatggaagg |
44709985 |
T |
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| Q |
398 |
catggagttggagatcagagaatgactt |
425 |
Q |
| |
|
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| T |
44709986 |
catggagttggagatcagagaatgactt |
44710013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 2045705 - 2045814
Alignment:
| Q |
86 |
ttcaaccattttgggaaaggattgatacagaggatgccaaggtgtagatggggattctttcatattgttaacaatgactacactcattggcttatgtatg |
185 |
Q |
| |
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||||||||||| || |||||||||| || || |||||||| || ||||||||||| || ||| || | |||||||| ||||| |||||| | ||||||| |
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| T |
2045705 |
ttcaaccatttcggacaaggattgattcaaagaatgccaagatgcagatggggatttttccatgttttgaacaatgattacacacattggatcatgtatg |
2045804 |
T |
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| Q |
186 |
ccattggtgg |
195 |
Q |
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|||||||||| |
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| T |
2045805 |
ccattggtgg |
2045814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 195
Target Start/End: Complemental strand, 3224760 - 3224635
Alignment:
| Q |
70 |
gcaaataactgtggctttcaaccattttgggaaaggattgatacagaggatgccaaggtgtagatggggattctttcatattgttaacaatgactacact |
169 |
Q |
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||||||||| || || |||||||| ||||| |||||||||| || || ||||||||||| |||| || || ||||| || | ||||||||||| ||| |
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| T |
3224760 |
gcaaataacagtagcattcaaccactttggacaaggattgattcaaagaatgccaaggtgcagatatggttttgttcatgttttgaacaatgactatact |
3224661 |
T |
|
| Q |
170 |
cattggcttatgtatgccattggtgg |
195 |
Q |
| |
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|||||| | |||||||| |||||||| |
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| T |
3224660 |
cattggataatgtatgcaattggtgg |
3224635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 25006600 - 25006552
Alignment:
| Q |
151 |
tgttaacaatgactacactcattggcttatgtatgccattggtggtagc |
199 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25006600 |
tgttaacaatgactacactcattgggaaatgtatgccattggtggtagc |
25006552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 16911735 - 16911880
Alignment:
| Q |
86 |
ttcaaccattttgggaaaggattgatacagaggatgccaaggtgtagatggggattctttcatattgttaacaatgactacactcattggcttatgtatg |
185 |
Q |
| |
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|||||||| ||||| || |||| || || ||||||||||||||||||| || || | ||| | ||||||||||||||||||| ||| ||||||| |
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| T |
16911735 |
ttcaaccactttggtaagagattaatccaaaggatgccaaggtgtagatttggttttatccatgtgcttaacaatgactacactcactgggagatgtatg |
16911834 |
T |
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| Q |
186 |
ccattggtggtagcacacatcccaccatactcagccagggtaaccg |
231 |
Q |
| |
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|||||||||| |||| ||||| ||||| |||| |||||||||| |
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| T |
16911835 |
ccattggtggcagcatgcatcctaccattatcagtgagggtaaccg |
16911880 |
T |
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