View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11400_high_22 (Length: 433)

Name: NF11400_high_22
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11400_high_22
NF11400_high_22
[»] chr4 (42 HSPs)
chr4 (13-218)||(52487296-52487501)
chr4 (301-414)||(52487102-52487215)
chr4 (283-358)||(3223100-3223175)
chr4 (283-358)||(5208212-5208287)
chr4 (283-357)||(7037370-7037444)
chr4 (283-355)||(27001297-27001369)
chr4 (283-355)||(47106022-47106094)
chr4 (287-357)||(44368088-44368158)
chr4 (283-357)||(51377179-51377253)
chr4 (283-356)||(8026651-8026724)
chr4 (283-356)||(55267888-55267961)
chr4 (171-215)||(3222986-3223030)
chr4 (283-355)||(31221524-31221596)
chr4 (317-369)||(44170506-44170558)
chr4 (171-215)||(44368232-44368276)
chr4 (283-358)||(53384227-53384301)
chr4 (174-215)||(9032780-9032821)
chr4 (171-212)||(31221410-31221451)
chr4 (171-212)||(38864769-38864810)
chr4 (174-215)||(47105911-47105952)
chr4 (283-355)||(1796476-1796547)
chr4 (171-215)||(5208357-5208401)
chr4 (283-355)||(24235431-24235503)
chr4 (171-211)||(37393339-37393379)
chr4 (172-215)||(8026783-8026826)
chr4 (172-215)||(24235318-24235361)
chr4 (172-211)||(41262652-41262691)
chr4 (283-354)||(52669498-52669569)
chr4 (173-215)||(1796365-1796407)
chr4 (283-349)||(41495124-41495190)
chr4 (177-211)||(51908609-51908643)
chr4 (174-204)||(53308340-53308370)
chr4 (173-215)||(55268031-55268073)
chr4 (174-215)||(7037514-7037555)
chr4 (169-214)||(20760250-20760295)
chr4 (169-214)||(20766641-20766686)
chr4 (306-355)||(24019859-24019908)
chr4 (173-214)||(51377324-51377365)
chr4 (171-204)||(54591753-54591786)
chr4 (283-355)||(9032891-9032963)
chr4 (172-212)||(9162064-9162104)
chr4 (284-360)||(42177933-42178009)
[»] chr3 (43 HSPs)
chr3 (283-354)||(30633703-30633774)
chr3 (283-356)||(13159772-13159845)
chr3 (283-358)||(34021348-34021423)
chr3 (283-357)||(36819067-36819141)
chr3 (285-354)||(38944037-38944107)
chr3 (286-360)||(53102785-53102859)
chr3 (283-352)||(20714354-20714423)
chr3 (283-359)||(11327219-11327295)
chr3 (283-358)||(30400041-30400116)
chr3 (172-218)||(44855249-44855295)
chr3 (284-354)||(44855363-44855433)
chr3 (286-355)||(40558889-40558958)
chr3 (283-360)||(50879706-50879783)
chr3 (287-359)||(50279971-50280043)
chr3 (171-214)||(52454125-52454168)
chr3 (283-357)||(28263656-28263730)
chr3 (173-215)||(38944171-38944213)
chr3 (283-357)||(38957402-38957476)
chr3 (174-215)||(13159661-13159702)
chr3 (173-214)||(34021494-34021535)
chr3 (283-356)||(46344525-46344598)
chr3 (287-355)||(3957906-3957974)
chr3 (171-215)||(30400186-30400230)
chr3 (171-215)||(36818953-36818997)
chr3 (283-355)||(52453980-52454052)
chr3 (171-215)||(53473607-53473651)
chr3 (284-355)||(35756092-35756163)
chr3 (167-213)||(7246-7292)
chr3 (170-212)||(8709382-8709424)
chr3 (170-212)||(9061269-9061311)
chr3 (173-215)||(32931948-32931990)
chr3 (283-356)||(3069462-3069535)
chr3 (173-210)||(3958053-3958090)
chr3 (171-212)||(7867744-7867785)
chr3 (283-352)||(32931809-32931878)
chr3 (175-212)||(40499737-40499774)
chr3 (174-215)||(50879595-50879636)
chr3 (164-200)||(1261056-1261092)
chr3 (288-356)||(8254143-8254211)
chr3 (171-215)||(20714240-20714284)
chr3 (171-215)||(46344411-46344455)
chr3 (172-212)||(46966209-46966249)
chr3 (172-212)||(53102935-53102975)
[»] chr5 (34 HSPs)
chr5 (283-359)||(9594589-9594665)
chr5 (283-360)||(15622155-15622232)
chr5 (283-355)||(3263396-3263468)
chr5 (283-355)||(10522886-10522958)
chr5 (283-359)||(12512904-12512980)
chr5 (283-352)||(33823585-33823654)
chr5 (174-218)||(15918017-15918061)
chr5 (283-359)||(30574261-30574337)
chr5 (283-358)||(11464008-11464083)
chr5 (283-358)||(22920377-22920452)
chr5 (283-357)||(15917912-15917986)
chr5 (283-357)||(19271970-19272044)
chr5 (283-355)||(4954577-4954649)
chr5 (283-355)||(9596702-9596774)
chr5 (283-355)||(25345449-25345521)
chr5 (283-359)||(38010983-38011059)
chr5 (173-215)||(4954465-4954507)
chr5 (283-345)||(12401303-12401365)
chr5 (171-212)||(36572688-36572729)
chr5 (174-214)||(3109618-3109658)
chr5 (283-358)||(1760472-1760547)
chr5 (172-215)||(32634706-32634749)
chr5 (173-215)||(9594477-9594519)
chr5 (172-214)||(11148509-11148551)
chr5 (171-213)||(12417623-12417665)
chr5 (165-215)||(38010863-38010913)
chr5 (171-212)||(125089-125130)
chr5 (174-215)||(3263538-3263579)
chr5 (174-215)||(9599758-9599799)
chr5 (173-218)||(25345339-25345384)
chr5 (174-215)||(30574407-30574448)
chr5 (172-212)||(6964403-6964443)
chr5 (172-212)||(12401190-12401230)
chr5 (283-323)||(28501728-28501768)
[»] chr2 (25 HSPs)
chr2 (283-357)||(27307131-27307205)
chr2 (283-355)||(23047971-23048043)
chr2 (283-357)||(3195973-3196047)
chr2 (286-355)||(29893724-29893793)
chr2 (283-356)||(38246638-38246711)
chr2 (283-355)||(44484544-44484616)
chr2 (283-352)||(37966467-37966536)
chr2 (171-215)||(27307261-27307305)
chr2 (283-355)||(34144440-34144512)
chr2 (286-357)||(23391176-23391247)
chr2 (164-214)||(31296526-31296576)
chr2 (174-215)||(3196117-3196158)
chr2 (172-212)||(14140370-14140410)
chr2 (283-354)||(12175217-12175288)
chr2 (287-357)||(6885025-6885095)
chr2 (283-357)||(36582367-36582441)
chr2 (172-213)||(29871384-29871425)
chr2 (174-215)||(29893610-29893651)
chr2 (174-215)||(30487499-30487540)
chr2 (170-215)||(34144581-34144626)
chr2 (175-215)||(20974354-20974394)
chr2 (172-204)||(23391070-23391102)
chr2 (284-360)||(29871238-29871314)
chr2 (283-323)||(36383573-36383613)
chr2 (175-215)||(38246781-38246821)
[»] scaffold0002 (2 HSPs)
scaffold0002 (283-356)||(147143-147216)
scaffold0002 (174-215)||(147286-147327)
[»] chr8 (29 HSPs)
chr8 (283-360)||(41273626-41273703)
chr8 (287-356)||(36593673-36593742)
chr8 (283-355)||(30927819-30927891)
chr8 (286-360)||(6656222-6656296)
chr8 (286-360)||(6736624-6736698)
chr8 (287-356)||(19723093-19723162)
chr8 (283-359)||(1065528-1065604)
chr8 (286-360)||(6745925-6746000)
chr8 (283-352)||(41293613-41293681)
chr8 (171-215)||(20288530-20288574)
chr8 (171-215)||(21075159-21075203)
chr8 (171-211)||(40413372-40413412)
chr8 (284-359)||(6825161-6825236)
chr8 (172-215)||(41273513-41273556)
chr8 (172-215)||(41746818-41746861)
chr8 (284-359)||(43587753-43587828)
chr8 (173-215)||(33115904-33115946)
chr8 (283-357)||(37568498-37568572)
chr8 (286-355)||(14531735-14531804)
chr8 (174-211)||(30389998-30390035)
chr8 (175-212)||(39719281-39719318)
chr8 (283-355)||(6105323-6105395)
chr8 (283-355)||(20288644-20288716)
chr8 (283-355)||(21075273-21075345)
chr8 (171-215)||(23952491-23952535)
chr8 (171-215)||(33817153-33817197)
chr8 (173-213)||(36064029-36064069)
chr8 (172-212)||(36497659-36497699)
chr8 (171-207)||(43419876-43419912)
[»] scaffold0193 (1 HSPs)
scaffold0193 (284-356)||(24785-24857)
[»] scaffold0004 (1 HSPs)
scaffold0004 (286-357)||(249028-249099)
[»] chr1 (23 HSPs)
chr1 (283-358)||(6829670-6829745)
chr1 (283-357)||(13813669-13813743)
chr1 (283-357)||(25130814-25130888)
chr1 (283-355)||(26501406-26501478)
chr1 (283-360)||(29489242-29489319)
chr1 (283-355)||(50035426-50035498)
chr1 (172-215)||(6829813-6829856)
chr1 (283-346)||(36669267-36669330)
chr1 (283-357)||(25995571-25995647)
chr1 (174-215)||(27578182-27578223)
chr1 (164-211)||(50797781-50797828)
chr1 (173-215)||(3291455-3291497)
chr1 (177-215)||(25130706-25130744)
chr1 (174-212)||(32938859-32938897)
chr1 (174-212)||(38019537-38019575)
chr1 (173-215)||(49645361-49645403)
chr1 (174-212)||(50528090-50528128)
chr1 (171-212)||(18610770-18610811)
chr1 (174-215)||(25995460-25995501)
chr1 (283-356)||(27578293-27578366)
chr1 (174-215)||(29362722-29362763)
chr1 (172-213)||(35883639-35883680)
chr1 (285-325)||(15067745-15067785)
[»] chr7 (23 HSPs)
chr7 (283-361)||(42431834-42431912)
chr7 (283-355)||(26041421-26041493)
chr7 (283-355)||(30864305-30864377)
chr7 (283-357)||(30201370-30201444)
chr7 (173-218)||(27164864-27164909)
chr7 (283-360)||(44175656-44175733)
chr7 (283-355)||(2346947-2347019)
chr7 (283-355)||(27164725-27164797)
chr7 (174-218)||(29162306-29162350)
chr7 (283-355)||(33050294-33050366)
chr7 (287-359)||(38978607-38978678)
chr7 (283-357)||(44511250-44511324)
chr7 (171-215)||(30864447-30864491)
chr7 (301-356)||(35004130-35004185)
chr7 (172-211)||(41985123-41985162)
chr7 (172-218)||(3040410-3040456)
chr7 (286-356)||(29162166-29162236)
chr7 (172-218)||(41227065-41227111)
chr7 (174-211)||(9944126-9944163)
chr7 (171-212)||(31274562-31274603)
chr7 (171-215)||(11751170-11751214)
chr7 (175-215)||(37325849-37325889)
chr7 (287-359)||(43255451-43255523)
[»] chr6 (18 HSPs)
chr6 (283-359)||(2056894-2056970)
chr6 (283-352)||(3660244-3660313)
chr6 (283-354)||(17902581-17902652)
chr6 (171-218)||(27334855-27334902)
chr6 (171-218)||(27395595-27395642)
chr6 (283-356)||(11017493-11017566)
chr6 (283-354)||(3339388-3339459)
chr6 (173-212)||(17902725-17902764)
chr6 (174-215)||(2056783-2056824)
chr6 (171-212)||(15722536-15722577)
chr6 (170-211)||(30767300-30767341)
chr6 (283-355)||(237286-237358)
chr6 (283-359)||(1803980-1804056)
chr6 (171-215)||(3339529-3339573)
chr6 (171-211)||(12441535-12441575)
chr6 (283-355)||(15328600-15328672)
chr6 (283-351)||(27334975-27335043)
chr6 (283-351)||(27395715-27395783)
[»] scaffold0003 (1 HSPs)
scaffold0003 (283-358)||(88919-88994)
[»] scaffold0514 (2 HSPs)
scaffold0514 (283-356)||(1383-1456)
scaffold0514 (171-215)||(1526-1570)
[»] scaffold0085 (1 HSPs)
scaffold0085 (283-355)||(31188-31260)
[»] scaffold0618 (1 HSPs)
scaffold0618 (283-356)||(3472-3545)
[»] scaffold0121 (1 HSPs)
scaffold0121 (286-358)||(29897-29969)
[»] scaffold0011 (1 HSPs)
scaffold0011 (287-355)||(18710-18777)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 52487501 - 52487296
Alignment:
Q  13 tgaacatgcaaacgtcgattttcccatattcagaaagttcaaatgcttaagtttctctccttgcctgcttgttatgatagaatagcctatcgtgtccgat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52487501 tgaacatgcaaacgtcgattttcccatattcagaaagttcaaatgcttaagtttctctccttgcctgcttgttatgatagaatagcctatcgtgtccgat 52487402  T
Q  113 attgtttattttagtctttagctgttcacctacctagattgttccatcacaatttttgaaagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| || ||||    
T  52487401 attgtttattttagtctttaggtgttcacctatctagattgttccatcacaatttttgaaagataaatgatatttgtacaactaatttgtgataattttt 52487302  T
Q  213 gtataa 218  Q
    ||||||    
T  52487301 gtataa 52487296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 301 - 414
Target Start/End: Complemental strand, 52487215 - 52487102
Alignment:
Q  301 aaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttttcaaacactactaccaaaattcataacacgtttatattggg 400  Q
    ||||||||||| ||||||||||||||||| | | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52487215 aaaataaggttatcactaaagttatcataaagtggatgtacaaatatcattgctttttttcaaacactactaccaaaattcataacacgtttatattggg 52487116  T
Q  401 accattgtataggt 414  Q
    ||| ||||||||||    
T  52487115 accgttgtataggt 52487102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 3223100 - 3223175
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttt 358  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| ||||||||||||||||||||    
T  3223100 gaccaataagaagagagaaaaagaaggttgtcactaaagttttcatggaatggatgtacaaatatcattgctcttt 3223175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 5208287 - 5208212
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttt 358  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| ||||||||||||||||||||    
T  5208287 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctcttt 5208212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 7037444 - 7037370
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||||||||||| |||| ||||||||| |||||||| |||| |||||||| ||||||||| |||||||||    
T  7037444 gaccaataagaagggagaaaaacaaggttgtccctaaagttgtcatggaatagatgtacaaatataattgctctt 7037370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 27001369 - 27001297
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| |||||||||||||||||    
T  27001369 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctc 27001297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 47106022 - 47106094
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| |||||||||||||||||    
T  47106022 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctc 47106094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 44368158 - 44368088
Alignment:
Q  287 aataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||  ||| ||| |||||||||||||||||||    
T  44368158 aataagaagagagaaaaataaggttgtcactaaagttgtcatgaaatggatgtacaaatatcattgctctt 44368088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 51377253 - 51377179
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||  |||| ||| |||||||||||||||||||    
T  51377253 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcaaggaatggatgtacaaatatcattgctctt 51377179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 8026724 - 8026651
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    ||||||||||||| ||| |||| || ||||||||||||||| |||| |||| ||| ||||||||||||||||||    
T  8026724 gaccaataagaagagagaaaaacaaagttgtcactaaagttgtcatggaatggatgtacaaatatcattgctct 8026651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 55267961 - 55267888
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    ||||||||||||| ||| |||| |||||| ||||||||||| | || |||||| | ||||||||||||||||||    
T  55267961 gaccaataagaagagagaaaaacaaggttatcactaaagttgttatggaataggtgtacaaatatcattgctct 55267888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 3222986 - 3223030
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  3222986 aaagagaaatgatatttgtacaatcaatttgtgacaacttttgta 3223030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 31221524 - 31221596
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| ||| ||||||||||| || |||| |||| ||| |||||||||||||||||    
T  31221524 gaccaataagaagagagaaaaacaagattgtcactaaaattgtcatggaattgatgtacaaatatcattgctc 31221596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 44170558 - 44170506
Alignment:
Q  317 taaagttatcatagaatagatatacaaatatcattgctctttttcaaacacta 369  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||| ||||    
T  44170558 taaagttatcattaaatagatatacaaatatcattgctcttttacaaatacta 44170506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 44368276 - 44368232
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  44368276 aaagagaaatgatatttgtacaatcaatttgtgacaacttttgta 44368232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 53384301 - 53384227
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttt 358  Q
    ||||||||||||| ||| |||| ||  |||||||||||||||||||| ||| ||| ||||||||| ||||||||||    
T  53384301 gaccaataagaagagagaaaaacaaa-ttgtcactaaagttatcataaaatggatgtacaaatattattgctcttt 53384227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 9032780 - 9032821
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  9032780 gagaaatgatatttgtacaatcaatttgtgacaacttttgta 9032821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 31221410 - 31221451
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  31221410 aaagagaaatgatatttgtacaatcaatttgtgacaactttt 31221451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 38864810 - 38864769
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  38864810 aaagagaaatgatatttgtacaattattttgtgacaactttt 38864769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 47105911 - 47105952
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  47105911 gagaaatgatatttgtacaattaatttgtgataacttttgta 47105952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 1796476 - 1796547
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| || || |||||||||||| |||| |||| ||| |||||||||||||||||    
T  1796476 gaccaataagaagagagaaaaacaaagt-gtcactaaagttgtcatggaatggatgtacaaatatcattgctc 1796547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 5208401 - 5208357
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||    
T  5208401 aaagagaaatgatatttgtacaaccaatttgtgacaacttttgta 5208357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 24235431 - 24235503
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| ||| |||  |||||||||||||| ||||  ||| ||| |||||||||||||||||    
T  24235431 gaccaataagaagagagaaaattaaaattgtcactaaagttgtcatgaaatggatgtacaaatatcattgctc 24235503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 37393339 - 37393379
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttt 211  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  37393339 aaagagaaatgatatttgtataattattttgagacaacttt 37393379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 8026826 - 8026783
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||| || ||| ||||||||||||||||||||    
T  8026826 aagagaaatgatatttatacaatcaatttgtgacaacttttgta 8026783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 24235318 - 24235361
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||    
T  24235318 aagagaaatgatatttgtacaatcaatttgtgacaatttttgta 24235361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 41262691 - 41262652
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttt 211  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  41262691 aagagaaatgatatttgtacaattattttgtgacaacttt 41262652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 52669569 - 52669498
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgct 354  Q
    ||||||||| ||| ||| |||| ||| |||||||||||||  ||||| ||| ||| ||||||||||||||||    
T  52669569 gaccaataaaaagagagaaaaacaagattgtcactaaagtggtcataaaatggatgtacaaatatcattgct 52669498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 1796365 - 1796407
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  1796365 agagaaatgatatttgtacaaccaatttgtgacaacttttgta 1796407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 41495124 - 41495190
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatca 349  Q
    ||||||||||||| ||| |||| || |||||||| ||| |||||||  | |||||||||||||||||    
T  41495124 gaccaataagaagagagaaaaacaaagttgtcaccaaaattatcatcaattagatatacaaatatca 41495190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 51908643 - 51908609
Alignment:
Q  177 aaatgatatttgtataattaatttgtgacaacttt 211  Q
    |||||||||||||| ||||||||||||||||||||    
T  51908643 aaatgatatttgtacaattaatttgtgacaacttt 51908609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 53308340 - 53308370
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtga 204  Q
    |||||||||||||||||||||||||||||||    
T  53308340 gagaaatgatatttgtataattaatttgtga 53308370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 55268073 - 55268031
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  55268073 agagaaatgatatttgtacaaccaatttgtgacaacttttgta 55268031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 7037555 - 7037514
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| ||  ||||||||||||||||||||    
T  7037555 gagaaatgatatttgtacaaccaatttgtgacaacttttgta 7037514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 20760250 - 20760295
Alignment:
Q  169 tgaaagagaaatgatatttgtataattaatttgtgacaacttttgt 214  Q
    |||||||||||||||||||||| ||||| ||| | |||||||||||    
T  20760250 tgaaagagaaatgatatttgtacaattattttttaacaacttttgt 20760295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 20766641 - 20766686
Alignment:
Q  169 tgaaagagaaatgatatttgtataattaatttgtgacaacttttgt 214  Q
    |||||||||||||||||||||| ||||| ||| | |||||||||||    
T  20766641 tgaaagagaaatgatatttgtacaattattttttaacaacttttgt 20766686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 24019908 - 24019859
Alignment:
Q  306 aaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||| |||||| ||||  ||||||| |||||||||||||||||    
T  24019908 aaggttgtcaccaaagttgtcattaaatagatgtacaaatatcattgctc 24019859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 51377365 - 51377324
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgt 214  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  51377365 agagaaatgatatttgtacaaccaatttgtgacaacttttgt 51377324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 54591786 - 54591753
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtga 204  Q
    |||||||||||||||||||||||||| |||||||    
T  54591786 aaagagaaatgatatttgtataattattttgtga 54591753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 9032891 - 9032963
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||| ||  ||| |||| |||||||||||||||||| | ||  ||| ||| |||||||||||||||||    
T  9032891 gaccaataaaaaaagagaaaaacaaggttgtcactaaagttgtaatgaaatggatgtacaaatatcattgctc 9032963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 9162064 - 9162104
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  9162064 aagagaaatgatatttgtacaatcattttgtgacaactttt 9162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 42178009 - 42177933
Alignment:
Q  284 accaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttttt 360  Q
    |||||||||||| ||| |||| || ||||| || |||||||||||  | |  |||||||||||||| ||||||||||    
T  42178009 accaataagaagagagaaaaacaaagttgttaccaaagttatcatcaattgaatatacaaatatcactgctcttttt 42177933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 30633774 - 30633703
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgct 354  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  30633774 gaccaataagaagagagaaaaataaggttgtcattaaagttatcataaaatagatgtacaaatatcattgct 30633703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 13159772 - 13159845
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| ||||||||||||||||||    
T  13159772 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctct 13159845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 34021423 - 34021348
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttt 358  Q
    ||||||||||||| ||| |||| || ||||||||||||||| |||| |||| ||| ||||||||||||||||||||    
T  34021423 gaccaataagaagagagaaaaacaaagttgtcactaaagttgtcatggaatggatgtacaaatatcattgctcttt 34021348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 36819067 - 36819141
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| |||||||||||||| ||||    
T  36819067 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgttctt 36819141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 38944107 - 38944037
Alignment:
Q  285 ccaataagaagggaggaaaataaggttgtcactaaagttatcatag-aatagatatacaaatatcattgct 354  Q
    ||||||||||||||| |||||||| |||||||||||||| |||| | ||||||| ||||||||||||||||    
T  38944107 ccaataagaagggagaaaaataagattgtcactaaagttgtcatggaaatagatgtacaaatatcattgct 38944037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 53102859 - 53102785
Alignment:
Q  286 caataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttttt 360  Q
    |||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| ||||||||||||||| ||||||    
T  53102859 caataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgcccttttt 53102785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 20714354 - 20714423
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattg 352  Q
    |||||||||||||  || |||||||||||||||||||| ||||||| |||| ||| ||||||||||||||    
T  20714354 gaccaataagaagatagaaaaataaggttgtcactaaaattatcatggaatggatgtacaaatatcattg 20714423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 11327219 - 11327295
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    ||||||||||||| |||  ||| |||||||||||||||||| ||||  ||| ||| |||||||||||||||||||||    
T  11327219 gaccaataagaagagagagaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatcattgctctttt 11327295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 30400116 - 30400041
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttt 358  Q
    ||||||||||||| ||| |||| ||| |||||||||||||| |||| |||| ||| ||||||||| ||||||||||    
T  30400116 gaccaataagaagagagaaaaacaagattgtcactaaagttgtcatggaatggatgtacaaatataattgctcttt 30400041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 44855249 - 44855295
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttgtataa 218  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  44855249 aagagaaatgatatttgtataactattttgtgacaacttttgtataa 44855295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 44855363 - 44855433
Alignment:
Q  284 accaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgct 354  Q
    |||||||||||| ||| |||||||| |||||||||||||| ||||  ||| ||| ||||||||||||||||    
T  44855363 accaataagaagagagaaaaataagattgtcactaaagttgtcatgaaattgatgtacaaatatcattgct 44855433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 40558958 - 40558889
Alignment:
Q  286 caataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    |||||||||| ||| ||||||||||||||||||||||| | || ||||  || |||||||||||||||||    
T  40558958 caataagaagagagaaaaataaggttgtcactaaagttgttatggaatgaatgtacaaatatcattgctc 40558889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 50879706 - 50879783
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttttt 360  Q
    ||||||||||||| ||| | || || ||||||||||||||| |||| |||| ||| ||||||||||||| ||||||||    
T  50879706 gaccaataagaagagagaacaacaaagttgtcactaaagttgtcatggaatggatgtacaaatatcatttctcttttt 50879783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 50280043 - 50279971
Alignment:
Q  287 aataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    ||||||||| ||| |||| |||||||||| ||||||| ||||  ||| ||| |||||||||||||||||||||    
T  50280043 aataagaagagagaaaaacaaggttgtcattaaagttgtcatgaaatggatgtacaaatatcattgctctttt 50279971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 52454168 - 52454125
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgt 214  Q
    |||||||||||||||||||| ||| |||||||||||||||||||    
T  52454168 aaagagaaatgatatttgtacaatcaatttgtgacaacttttgt 52454125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 28263656 - 28263730
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    |||||||||||||  || ||||||| ||||||||||||||| ||||  ||| |||  ||||||||||||||||||    
T  28263656 gaccaataagaagaaagaaaaataaagttgtcactaaagttgtcatgaaatggatgaacaaatatcattgctctt 28263730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 38944213 - 38944171
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  38944213 agagaaatgatatttgtacaactaatttgtgacaacttttgta 38944171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 38957476 - 38957402
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||| ||| ||  |||||| | || || |||||||||||||  |||||||||||||||||||||||||||    
T  38957476 gaccaataaaaagagaaaaaaatatgattatcgctaaagttatcattaaatagatatacaaatatcattgctctt 38957402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 13159661 - 13159702
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  13159661 gagaaatgatatctgtacaattaatttgtgacaacttttgta 13159702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 34021535 - 34021494
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgt 214  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  34021535 agagaaatgatatttgtacaatcaatttgtgacaacttttgt 34021494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 46344525 - 46344598
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    |||||||||||||  || ||||||||||||||||||||||| || |  |||  || ||||||||||||||||||    
T  46344525 gaccaataagaagaaagaaaaataaggttgtcactaaagttgtcgtgaaatgaatgtacaaatatcattgctct 46344598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 3957974 - 3957906
Alignment:
Q  287 aataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    |||||||||  || |||| |||||||||||||||||| || | |||| ||| |||||||||||||||||    
T  3957974 aataagaagatagaaaaacaaggttgtcactaaagttgtcctggaatggatgtacaaatatcattgctc 3957906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 30400230 - 30400186
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||    
T  30400230 aaagagaaatgatatttgtacaacaaatttgtgacaacttttgta 30400186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 36818953 - 36818997
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||    
T  36818953 aaagagaaatgatatttgtacaaccaatttgtgacaacttttgta 36818997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 52454052 - 52453980
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| |||  ||| || ||||||||||||||| ||||  ||| ||| |||||||||||||||||    
T  52454052 gaccaataagaagagagagaaacaaagttgtcactaaagttgtcatgaaatggatgtacaaatatcattgctc 52453980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 53473607 - 53473651
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||    
T  53473607 aaagagaaatgatatttgtacaatcaatttgtgataacttttgta 53473651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 35756092 - 35756163
Alignment:
Q  284 accaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    |||||||||||| ||| |||| || |||||||| |||||| ||||  ||||||| ||||||||| |||||||    
T  35756092 accaataagaagagagaaaaacaaagttgtcaccaaagttgtcatgaaatagatgtacaaatatgattgctc 35756163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 7292 - 7246
Alignment:
Q  167 tttgaaagagaaatgatatttgtataattaatttgtgacaacttttg 213  Q
    |||||||||||||||||||||||| ||| | ||| ||||||||||||    
T  7292 tttgaaagagaaatgatatttgtacaatcattttctgacaacttttg 7246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 8709382 - 8709424
Alignment:
Q  170 gaaagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||||||| || ||||||| ||||||||||    
T  8709382 gaaagagaaatgatatttgtaaaaataatttgcgacaactttt 8709424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 9061269 - 9061311
Alignment:
Q  170 gaaagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||||||| || ||||||| ||||||||||    
T  9061269 gaaagagaaatgatatttgtaaaaataatttgcgacaactttt 9061311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 32931990 - 32931948
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  32931990 agagaaatgatatttgtacaaccaatttgtgacaacttttgta 32931948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 3069535 - 3069462
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    ||||||||||||| ||| |||| ||| ||  |||||||||| |||| |||| ||| | ||||||||||||||||    
T  3069535 gaccaataagaagagagaaaaacaagattcccactaaagttgtcatggaatggatgtgcaaatatcattgctct 3069462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 3958090 - 3958053
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaactt 210  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  3958090 agagaaatgatatttgtacaatcaatttgtgacaactt 3958053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 7867785 - 7867744
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  7867785 aaagagaaatgatatttgtacaactattttgtgacaactttt 7867744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 32931878 - 32931809
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattg 352  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |  |  ||| ||| ||||||||||||||    
T  32931878 gaccaataagaagagagaaaaacaaggttgtcactaaagttgttgtgaaatggatgtacaaatatcattg 32931809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 40499737 - 40499774
Alignment:
Q  175 agaaatgatatttgtataattaatttgtgacaactttt 212  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  40499737 agaaatgatatttgtataattattttatgacaactttt 40499774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 50879595 - 50879636
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| || ||| |||||||||||||||||    
T  50879595 gagaaatgatatttgtacaactaaattgtgacaacttttgta 50879636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 1261056 - 1261092
Alignment:
Q  164 atttttgaaagagaaatgatatttgtataattaattt 200  Q
    |||||| |||||||||||||||||| |||||||||||    
T  1261056 attttttaaagagaaatgatatttgaataattaattt 1261092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 8254143 - 8254211
Alignment:
Q  288 ataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    |||||||| |||  |||||| |||||||||||| || ||||  ||| ||| ||||||||||||||||||    
T  8254143 ataagaagagagagaaataatgttgtcactaaaattgtcatgaaatggatgtacaaatatcattgctct 8254211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 20714240 - 20714284
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||    
T  20714240 aaagagaaatgatatttgtacaaccaatttgtgacaacttctgta 20714284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 46344411 - 46344455
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| || |||||||| |||| |||||||    
T  46344411 aaagagaaatgatatttgtacaactaatttgttacaatttttgta 46344455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 46966249 - 46966209
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    |||||||||||| |||||||| ||| |||||||||||||||    
T  46966249 aagagaaatgatgtttgtatatttattttgtgacaactttt 46966209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 53102975 - 53102935
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  53102975 aagagaaatgatatttgtacgatcaatttgtgacaactttt 53102935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 9594589 - 9594665
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    ||||||||||||| |||  |||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||    
T  9594589 gaccaataagaagagagagaaataaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctctttt 9594665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 15622155 - 15622232
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttttt 360  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| ||||||||||||||||| ||||    
T  15622155 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctcatttt 15622232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 3263468 - 3263396
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| |||||||||||||||||    
T  3263468 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctc 3263396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 10522886 - 10522958
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| |||||||||||||||||||| || ||||  ||||||||||||||||||||    
T  10522886 gaccaataagaagagagaaaaacaaggttgtcactaaagttattatggaatgaatatacaaatatcattgctc 10522958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 12512904 - 12512980
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    ||||||||||||| ||| |||| ||| |||||||||||||| |||| |||| ||| |||||||||||||||||||||    
T  12512904 gaccaataagaagagagaaaaacaagattgtcactaaagttgtcatggaatggatgtacaaatatcattgctctttt 12512980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 33823654 - 33823585
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattg 352  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| ||||||||||||||    
T  33823654 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattg 33823585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 15918061 - 15918017
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgtataa 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  15918061 gagaaatgatatttgtacaattaatttgtgacaacttttgtataa 15918017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 30574337 - 30574261
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    ||||||||||||| ||| |||| || |||||||||||| || |||| |||| ||| |||||||||||||||||||||    
T  30574337 gaccaataagaagagagaaaaacaaagttgtcactaaaattgtcatggaatggatgtacaaatatcattgctctttt 30574261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 11464083 - 11464008
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttt 358  Q
    ||||||||| ||| ||| |||| |||||||||||||||||| | || |||| ||| ||||||||||||||||||||    
T  11464083 gaccaataaaaagagagaaaaacaaggttgtcactaaagttgttatggaatggatgtacaaatatcattgctcttt 11464008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 22920452 - 22920377
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttt 358  Q
    ||||||||||||| ||| |||| ||||||||||||| |||| ||||  ||||||| |||||||||||| |||||||    
T  22920452 gaccaataagaagagagaaaaacaaggttgtcactatagttgtcatgtaatagatgtacaaatatcatcgctcttt 22920377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 15917986 - 15917912
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||||||| |||  |||||| |||||| |||||||| |||| |||| ||| |||||||||||||||||||    
T  15917986 gaccaataagaagagagagaaataaagttgtcgctaaagttgtcatggaatggatgtacaaatatcattgctctt 15917912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 19271970 - 19272044
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||||||| ||| |||| || ||| |||||||| || ||||| ||||||| |||||||||||||||||||    
T  19271970 gaccaataagaagagagaaaaacaaagttatcactaaaattgtcatataatagatgtacaaatatcattgctctt 19272044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 4954577 - 4954649
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    |||| |||||||| ||| |||| |||||||||||||||||| | ||||||| ||| || ||||||||||||||    
T  4954577 gacccataagaagagagaaaaacaaggttgtcactaaagttgttatagaatggatgtagaaatatcattgctc 4954649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 9596774 - 9596702
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| ||| |||||||||||||| |||| ||||  || |||||||||||||||||    
T  9596774 gaccaataagaagagagaaaaacaagattgtcactaaagttgtcatggaatgaatgtacaaatatcattgctc 9596702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 25345449 - 25345521
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||||||| ||||||||||| || | || |||| ||| |||||||||||||||||    
T  25345449 gaccaataagaagagagaaaaataagattgtcactaaaattgttatggaatggatgtacaaatatcattgctc 25345521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 38010983 - 38011059
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    ||||||||||||| ||  |||| ||  ||||||||||| || |||| |||||||| |||||||||||||||||||||    
T  38010983 gaccaataagaagagaaaaaaacaaaattgtcactaaaattgtcatggaatagatgtacaaatatcattgctctttt 38011059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 4954465 - 4954507
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||| ||||||||||||||||||| ||||    
T  4954465 agagaaatgatatttgtacaattaatttgtgacaacttatgta 4954507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 12401303 - 12401365
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaat 345  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||||  ||| ||| |||||||    
T  12401303 gaccaataagaagagagaaaaataaggttgtcactaaagttgtcatgaaatggatgtacaaat 12401365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 36572688 - 36572729
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  36572688 aaagagaaatgatatttgtataactattttgtgacaactttt 36572729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 3109658 - 3109618
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgt 214  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  3109658 gagaaatgatatttgtacaatcaatttgtgacaacttttgt 3109618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 1760472 - 1760547
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttt 358  Q
    ||||||||||||| ||| |||  | ||||| |||||||||| |||   |||| |||||||||||||||||||||||    
T  1760472 gaccaataagaagagagaaaagcatggttgacactaaagttgtcaataaatacatatacaaatatcattgctcttt 1760547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 32634706 - 32634749
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||    
T  32634706 aagagaaatgatatttgtacaatcaatctgtgacaacttttgta 32634749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 9594477 - 9594519
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  9594477 agagaaatgatatttgtacaaccaatttgtgacaacttttgta 9594519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 11148509 - 11148551
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttgt 214  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||    
T  11148509 aagagaaatgatatttgtacaatcaatttttgacaacttttgt 11148551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 12417623 - 12417665
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttg 213  Q
    |||||||||||||||||||| ||||||||| || |||||||||    
T  12417623 aaagagaaatgatatttgtacaattaatttatggcaacttttg 12417665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 38010863 - 38010913
Alignment:
Q  165 tttttgaaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||| ||| ||||||||||||||||| ||| ||||||||| ||||||||||    
T  38010863 ttttagaacgagaaatgatatttgtacaatcaatttgtgataacttttgta 38010913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 125089 - 125130
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  125089 aaagagaaatgatatttgtacaactactttgtgacaactttt 125130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 3263579 - 3263538
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| ||  ||||||||||||||||||||    
T  3263579 gagaaatgatatttgtacaaccaatttgtgacaacttttgta 3263538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 9599799 - 9599758
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| ||  ||||||||||||||||||||    
T  9599799 gagaaatgatatttgtacaaccaatttgtgacaacttttgta 9599758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 25345339 - 25345384
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgtataa 218  Q
    |||||||||||||||||| ||||||||| ||| || ||||||||||    
T  25345339 agagaaatgatatttgtacaattaatttatgataatttttgtataa 25345384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 30574448 - 30574407
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| ||  ||||||||||||||||||||    
T  30574448 gagaaatgatatttgtacaaccaatttgtgacaacttttgta 30574407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 6964443 - 6964403
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||||| ||| ||||||||| |||||||    
T  6964443 aagagaaatgatatttgtacaatcaatttgtgaaaactttt 6964403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 12401190 - 12401230
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||||| ||| ||||||| |||||||||    
T  12401190 aagagaaatgatatttgtacaatcaatttgtaacaactttt 12401230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 28501728 - 28501768
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagtt 323  Q
    ||||||||||||| ||| |||| ||||||||||||||||||    
T  28501728 gaccaataagaagagagaaaaacaaggttgtcactaaagtt 28501768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 27307205 - 27307131
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||||||| ||| ||||||||||||||||||||||| |||| |||| ||| || ||||||||||||||||    
T  27307205 gaccaataagaagagagaaaaataaggttgtcactaaagttgtcatggaatggatgtataaatatcattgctctt 27307131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 23048043 - 23047971
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| |||||||||||||||||    
T  23048043 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctc 23047971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 3196047 - 3195973
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||||||| ||| |||| |||||||| ||||||||| |||| |||| ||| |||||||||||||||||||    
T  3196047 gaccaataagaagagagaaaaacaaggttgttactaaagttgtcatggaatggatgtacaaatatcattgctctt 3195973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 29893724 - 29893793
Alignment:
Q  286 caataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    |||||||||| ||| |||| ||  ||||||||||| |||||||||||| |||||||||||||||||||||    
T  29893724 caataagaagagagaaaaacaaaattgtcactaaacttatcatagaatggatatacaaatatcattgctc 29893793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 38246711 - 38246638
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    ||||||||||||| |||  ||| |||||||||||||||||| |||| |||| ||| ||||||||||||||||||    
T  38246711 gaccaataagaagagagagaaacaaggttgtcactaaagttgtcatggaattgatgtacaaatatcattgctct 38246638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 44484616 - 44484544
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| || ||||||||||||||| ||||| ||| ||| |||||||||||||||||    
T  44484616 gaccaataagaagagagaaaaacaaagttgtcactaaagttgtcataaaattgatgtacaaatatcattgctc 44484544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 37966467 - 37966536
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattg 352  Q
    ||||||||||||| ||| |||| |||||||||||||||||| ||||  ||| ||| ||||||||||||||    
T  37966467 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatcattg 37966536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 27307305 - 27307261
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  27307305 aaagagaaatgatatttgtacaatcaatttgtgacaacttttgta 27307261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 34144512 - 34144440
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| ||| |||||||||||||| |||| |||| ||  |||||||||||||||||    
T  34144512 gaccaataagaagagagaaaaacaagattgtcactaaagttgtcatggaattgaggtacaaatatcattgctc 34144440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 23391176 - 23391247
Alignment:
Q  286 caataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    |||||||||| ||| |||| || |||||| ||||||||||||| |||| ||| ||||||||||||| |||||    
T  23391176 caataagaagagagaaaaacaaagttgtcgctaaagttatcatggaatggatgtacaaatatcattcctctt 23391247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 31296526 - 31296576
Alignment:
Q  164 atttttgaaagagaaatgatatttgtataattaatttgtgacaacttttgt 214  Q
    ||||||||||||||||||||||||||| | ||| |||| ||||||||||||    
T  31296526 atttttgaaagagaaatgatatttgtacagttattttgcgacaacttttgt 31296576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 3196158 - 3196117
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  3196158 gagaaatgatatttgtacaatcaatttgtgacaacttttgta 3196117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 14140410 - 14140370
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  14140410 aagagaaatgatatttgtacaactaatttgtgacaactttt 14140370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 12175288 - 12175217
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgct 354  Q
    ||||||| | ||| |||||||| || |||||||| |||||||||||  |||| || ||||||||||||||||    
T  12175288 gaccaatcaaaagagaggaaaacaaagttgtcaccaaagttatcattaaataaatgtacaaatatcattgct 12175217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 6885025 - 6885095
Alignment:
Q  287 aataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||| ||| |||| || ||||||||||||||| ||||  |||  || |||||||||||||||||||    
T  6885025 aataagaagagagaaaaacaaagttgtcactaaagttgtcatgaaatgaatgtacaaatatcattgctctt 6885095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 36582367 - 36582441
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||| ||||  ||| |||| ||||||||||| |||||| ||||  ||| ||| |||||||||||||||||||    
T  36582367 gaccaattagaatagagaaaaacaaggttgtcaccaaagttgtcatcaaatggatgtacaaatatcattgctctt 36582441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 29871425 - 29871384
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttg 213  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||    
T  29871425 aagagaaatgatatttgtacaattagtttatgacaacttttg 29871384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 29893610 - 29893651
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| || |||||||||| ||||||||||    
T  29893610 gagaaatgatatttgtacaactaatttgtgataacttttgta 29893651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 30487540 - 30487499
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| ||  ||||||||||||||||||||    
T  30487540 gagaaatgatatttgtacaaccaatttgtgacaacttttgta 30487499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 34144626 - 34144581
Alignment:
Q  170 gaaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||||||| ||  |||||||||||| |||||||    
T  34144626 gaaagagaaatgatatttgtacaaccaatttgtgacaatttttgta 34144581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 20974354 - 20974394
Alignment:
Q  175 agaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||| || || |||||||||||||||||||||    
T  20974354 agaaatgatatttttacaactaatttgtgacaacttttgta 20974394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 23391070 - 23391102
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtga 204  Q
    ||||||||||||||||||| |||||||||||||    
T  23391070 aagagaaatgatatttgtacaattaatttgtga 23391102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 29871314 - 29871238
Alignment:
Q  284 accaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttttt 360  Q
    |||||||||||| |||  ||| || |||||||| |||||| ||||  |||||||  ||||||||||| |||||||||    
T  29871314 accaataagaagagagagaaacaaagttgtcaccaaagttgtcatgaaatagatggacaaatatcatggctcttttt 29871238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 36383573 - 36383613
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagtt 323  Q
    ||||||||||||| ||| |||| ||||||||||||||||||    
T  36383573 gaccaataagaagagagaaaaacaaggttgtcactaaagtt 36383613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 38246821 - 38246781
Alignment:
Q  175 agaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||| ||| |||||||||||| |||||||    
T  38246821 agaaatgatatttgtacaatcaatttgtgacaatttttgta 38246781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 147216 - 147143
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| ||||||||||||||||||    
T  147216 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctct 147143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 147327 - 147286
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  147327 gagaaatgatatctgtacaattaatttgtgacaacttttgta 147286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 41273626 - 41273703
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttttt 360  Q
    ||||||||||||| ||| |||| |||||||| ||||||||| |||| |||| ||| ||||||||||||||||||||||    
T  41273626 gaccaataagaagagagaaaaacaaggttgttactaaagttgtcatggaatggatgtacaaatatcattgctcttttt 41273703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 36593742 - 36593673
Alignment:
Q  287 aataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    ||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| ||||||||||||||||||    
T  36593742 aataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctct 36593673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 30927891 - 30927819
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| |||||||||||||||||| ||||  ||| ||| |||||||||||||||||    
T  30927891 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatcattgctc 30927819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 6656296 - 6656222
Alignment:
Q  286 caataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttttt 360  Q
    |||||||||| ||| |||| ||||||||||||||| ||||||| |||| ||| |||||||| |||||||| ||||    
T  6656296 caataagaagagagaaaaacaaggttgtcactaaaattatcatggaatggatgtacaaataccattgctcctttt 6656222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 6736698 - 6736624
Alignment:
Q  286 caataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttttt 360  Q
    |||||||||| ||| |||| ||||||||||||||| ||||||| |||| ||| |||||||| |||||||| ||||    
T  6736698 caataagaagagagaaaaacaaggttgtcactaaaattatcatggaatggatgtacaaataccattgctcctttt 6736624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 19723162 - 19723093
Alignment:
Q  287 aataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    ||||||||| ||| |||| |||||||||||||||||| ||||   |||||| ||||||||||||||||||    
T  19723162 aataagaagagagaaaaacaaggttgtcactaaagttgtcatgatatagatgtacaaatatcattgctct 19723093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 1065528 - 1065604
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    |||||| ||||||  || |||| |||||| ||||||||||| |||| |||| ||| |||||||||||||||||||||    
T  1065528 gaccaaaaagaagatagaaaaacaaggttatcactaaagttgtcatggaatggatgtacaaatatcattgctctttt 1065604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 6746000 - 6745925
Alignment:
Q  286 caataagaagggaggaaaa-taaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttttt 360  Q
    |||||||||| ||| |||| |||||||||||||||| || |||| |||| ||| |||||||| |||||||||||||    
T  6746000 caataagaagagagaaaaactaaggttgtcactaaaattgtcatggaatggatgtacaaataccattgctcttttt 6745925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 41293681 - 41293613
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattg 352  Q
    ||||||||||||| ||| |||| ||| |||||||||||||| |||| |||| ||| ||||||||||||||    
T  41293681 gaccaataagaagagagaaaaacaag-ttgtcactaaagttgtcatggaatggatgtacaaatatcattg 41293613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 20288530 - 20288574
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||    
T  20288530 aaagagaaatgatatttgtacaaccaatttgtgacaacttttgta 20288574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 21075159 - 21075203
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||    
T  21075159 aaagagaaatgatatttgtacaaccaatttgtgacaacttttgta 21075203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 40413412 - 40413372
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttt 211  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  40413412 aaagagaaatgatatttgtacaattattttgtgacaacttt 40413372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 359
Target Start/End: Complemental strand, 6825236 - 6825161
Alignment:
Q  284 accaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    |||||||||||| ||| |||||||||||| ||| |||||| |||   ||||||| ||||||||| |||| ||||||    
T  6825236 accaataagaagagagaaaaataaggttgacaccaaagttgtcaataaatagatgtacaaatattattgttctttt 6825161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 41273513 - 41273556
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||    
T  41273513 aagagaaatgatatttgtacaaacaatttgtgacaacttttgta 41273556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 41746818 - 41746861
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||||| || |||| ||||||||||||||||    
T  41746818 aagagaaatgatatttgtacaactaatctgtgacaacttttgta 41746861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 359
Target Start/End: Original strand, 43587753 - 43587828
Alignment:
Q  284 accaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    |||||| | ||| ||| |||| || |||||||| |||||| ||||  ||| |||||||||||||||||||||||||    
T  43587753 accaatcaaaagagagaaaaacaaagttgtcaccaaagttgtcattaaatggatatacaaatatcattgctctttt 43587828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 33115904 - 33115946
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||||||| ||||||| || |||||||    
T  33115904 agagaaatgatatttgtataattattttgtgataatttttgta 33115946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 37568572 - 37568498
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||||||   || |||| || ||||||||||||||||| ||  ||| ||| |||||||||||||||||||    
T  37568572 gaccaataagaaaaaagaaaaacaatgttgtcactaaagttataatgaaatggatgtacaaatatcattgctctt 37568498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 14531735 - 14531804
Alignment:
Q  286 caataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    |||||||||| ||| ||||||||||||||| ||| ||| ||||   |||||| ||||||||| |||||||    
T  14531735 caataagaagagagaaaaataaggttgtcattaatgttgtcatgagatagatgtacaaatattattgctc 14531804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 30389998 - 30390035
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttt 211  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  30389998 gagaaatgatatttctataactaatttgtgacaacttt 30390035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 39719318 - 39719281
Alignment:
Q  175 agaaatgatatttgtataattaatttgtgacaactttt 212  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  39719318 agaaatgatatttgtacaatcaatttgtgacaactttt 39719281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 6105395 - 6105323
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||| | ||| ||||||||||| ||||||||||||||| || |  ||| ||| ||||| |||||||||||    
T  6105395 gaccaatcaaaagagaggaaaataaagttgtcactaaagttgtctttaaatggatgtacaagtatcattgctc 6105323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 20288644 - 20288716
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| |||  ||| || ||||||||||||||  | || |||| ||| |||||||||||||||||    
T  20288644 gaccaataagaagagagagaaacaacgttgtcactaaagtcgtaatggaatggatgtacaaatatcattgctc 20288716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 21075273 - 21075345
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| |||  ||| || ||||||||||||||  | || |||| ||| |||||||||||||||||    
T  21075273 gaccaataagaagagagagaaacaacgttgtcactaaagtcgtaatggaatggatgtacaaatatcattgctc 21075345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 23952491 - 23952535
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||||| |||||||  |||||||||    
T  23952491 aaagagaaatgatatttgtacaattattttgtgatgacttttgta 23952535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 33817153 - 33817197
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||| ||||||| |||| |||||||    
T  33817153 aaagagaaatgatatttgtacaatcaatttgtaacaatttttgta 33817197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 36064029 - 36064069
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttg 213  Q
    |||||||||||||||||| ||| | ||||||||||||||||    
T  36064029 agagaaatgatatttgtacaatcattttgtgacaacttttg 36064069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 36497659 - 36497699
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||||| || || |||||||||||||||    
T  36497659 aagagaaatgatatttgtacaactattttgtgacaactttt 36497699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 43419876 - 43419912
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaa 207  Q
    |||||||||||||||||||| || |||||||||||||    
T  43419876 aaagagaaatgatatttgtacaactaatttgtgacaa 43419912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 24785 - 24857
Alignment:
Q  284 accaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||  ||||||| |||||||||| |||||||    
T  24785 accaataagaagagagaaaaataaggttgtcactaaaattatcatgaaatagatgtacaaatatcgttgctct 24857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 249099 - 249028
Alignment:
Q  286 caataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    |||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| |||||||||||||||||||    
T  249099 caataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctctt 249028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 6829745 - 6829670
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttt 358  Q
    ||||||||||||| ||| |||| ||| |||||||||||||| |||| |||| ||| ||||||||||||||||||||    
T  6829745 gaccaataagaagagagaaaaacaagattgtcactaaagttgtcatggaatggatgtacaaatatcattgctcttt 6829670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 13813669 - 13813743
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||||||| ||| |||| |||||||||||||||||| | || |||| ||| |||||||||||||||||||    
T  13813669 gaccaataagaagagagaaaaacaaggttgtcactaaagttgttatggaatggatgtacaaatatcattgctctt 13813743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 25130814 - 25130888
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||||||| ||| |||| |||||||||||||||||| ||||  ||||||| ||||||||||| |||||||    
T  25130814 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatagatgtacaaatatcactgctctt 25130888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 26501406 - 26501478
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| |||||||||| ||||||| ||||  ||||||| |||||||||||||||||    
T  26501406 gaccaataagaagagagaaaaacaaggttgtcattaaagttgtcatgtaatagatgtacaaatatcattgctc 26501478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 360
Target Start/End: Complemental strand, 29489319 - 29489242
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttttt 360  Q
    |||||||||||||  || |||| |||||||||||||||||| ||||  |||| || ||||||||||| ||||||||||    
T  29489319 gaccaataagaagaaagaaaaacaaggttgtcactaaagttgtcatgaaatatatgtacaaatatcactgctcttttt 29489242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 50035498 - 50035426
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||| ||  ||| ||||||| ||||||||||||||| ||||  ||||||| |||||||||||||||||    
T  50035498 gaccaataacaaaagagaaaaataaagttgtcactaaagttgtcatgaaatagatgtacaaatatcattgctc 50035426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 6829856 - 6829813
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  6829856 aagagaaatgatatttgtacaactaatttgtgacaacttttgta 6829813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 36669330 - 36669267
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaata 346  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| ||||||||    
T  36669330 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatttacaaata 36669267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 25995571 - 25995647
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcat--agaatagatatacaaatatcattgctctt 357  Q
    ||||||||| ||| ||| ||||||||||||||| ||||||| ||||  |  |||||| |||||||||||||||||||    
T  25995571 gaccaataaaaagagagaaaaataaggttgtcattaaagttgtcatgaaatatagatgtacaaatatcattgctctt 25995647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 27578182 - 27578223
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  27578182 gagaaatgatatttgtacaattaatttgggacaacttttgta 27578223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 50797781 - 50797828
Alignment:
Q  164 atttttgaaagagaaatgatatttgtataattaatttgtgacaacttt 211  Q
    |||||| |||||||||||||||||||| ||| | ||||||||||||||    
T  50797781 attttttaaagagaaatgatatttgtacaatcattttgtgacaacttt 50797828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 3291497 - 3291455
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||    
T  3291497 agagaaatgatattcgtacaattaatttgttacaacttttgta 3291455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 25130706 - 25130744
Alignment:
Q  177 aaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  25130706 aaatgatatttgtacaatcaatttgtgacaacttttgta 25130744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 32938859 - 32938897
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  32938859 gagaaatgatatttgtacaattaatttgtgacaattttt 32938897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 38019575 - 38019537
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  38019575 gagaaatgatatttgtataattattttgtgataactttt 38019537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 49645361 - 49645403
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||||| | ||| ||||||||||||||    
T  49645361 agagaaatgatatttgtataatcattttatgacaacttttgta 49645403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 50528128 - 50528090
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  50528128 gagaaatgatatttgtacaatcaatttgtgacaactttt 50528090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 18610770 - 18610811
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  18610770 aaagagaaatgatatttgtacaactattttgtgacaactttt 18610811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 25995460 - 25995501
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| ||| |||||||||||| |||||||    
T  25995460 gagaaatgatatttgtacaatcaatttgtgacaagttttgta 25995501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 27578293 - 27578366
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    ||||||||||||  ||| |||| |||||||| |||||| || |||| ||||  || ||||||||||||||||||    
T  27578293 gaccaataagaatagagaaaaacaaggttgttactaaaattgtcatggaatgaatgtacaaatatcattgctct 27578366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 29362763 - 29362722
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||    
T  29362763 gagaaatgatatttgtacaatcaatttatgacaacttttgta 29362722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 35883680 - 35883639
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttg 213  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||    
T  35883680 aagagaaatgatatttgtacaattattttttgacaacttttg 35883639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 15067785 - 15067745
Alignment:
Q  285 ccaataagaagggaggaaaataaggttgtcactaaagttat 325  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  15067785 ccaataagaagagaggaaaaaaatgttgtcactaaagttat 15067745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 361
Target Start/End: Original strand, 42431834 - 42431912
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttttc 361  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| |||| ||| ||||||||||||| ||| |||||    
T  42431834 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattactcattttc 42431912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 26041421 - 26041493
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| || ||||||||||||||| ||||| ||| ||| |||||||||||||||||    
T  26041421 gaccaataagaagagagaaaaacaaagttgtcactaaagttgtcataaaatggatgtacaaatatcattgctc 26041493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 30864377 - 30864305
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||  ||| |||| |||||||||||||||||| |||| |||| ||| |||||||||||||||||    
T  30864377 gaccaataagaaaagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctc 30864305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 30201370 - 30201444
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||| ||| ||| |||||||| |||||| ||||||| |||||||||  || |||||||||||||||||||    
T  30201370 gaccaataaaaagagagaaaaataagattgtcattaaagttgtcatagaatgtatgtacaaatatcattgctctt 30201444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 27164909 - 27164864
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaacttttgtataa 218  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||    
T  27164909 agagaaatgatatttgtacaatcaatttgtgacaacttttgtataa 27164864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 44175656 - 44175733
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttttt 360  Q
    |||||||||||||  || |||| ||| |||||||||||||| || | |||||||| || |||||||||||||||||||    
T  44175656 gaccaataagaagaaagaaaaagaagattgtcactaaagttgtcgtggaatagatgtataaatatcattgctcttttt 44175733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 2347019 - 2346947
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||| |||  || ||||||||||||||||||||||| ||||| |||  || |||||||||||||||||    
T  2347019 gaccaataacaagaaagaaaaataaggttgtcactaaagttgtcataaaatgaatgtacaaatatcattgctc 2346947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 27164797 - 27164725
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| || |||||||||||| || |||| |||| ||| |||||||||||||||||    
T  27164797 gaccaataagaagagagaaaaacaaagttgtcactaaaattgtcatggaatggatgtacaaatatcattgctc 27164725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 29162350 - 29162306
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgtataa 218  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||    
T  29162350 gagaaatgatatttgtacaatcaatttgtgacaacttttgtataa 29162306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 33050294 - 33050366
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| |||  ||| |||||||||||||||||| ||||  ||| ||| |||||||||||||||||    
T  33050294 gaccaataagaagagagagaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatcattgctc 33050366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 38978607 - 38978678
Alignment:
Q  287 aataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    ||||||||| ||| |||| |||||||||||||||||| |||| |||  ||| |||||||||||||||||||||    
T  38978607 aataagaagagagaaaaacaaggttgtcactaaagttgtcat-gaaaggatgtacaaatatcattgctctttt 38978678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 44511250 - 44511324
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctt 357  Q
    ||||||||||||  ||| |||| ||  |||||||||||||| ||||| ||| ||| |||||||||||||||||||    
T  44511250 gaccaataagaaaagagaaaaacaaaattgtcactaaagttgtcataaaatggatgtacaaatatcattgctctt 44511324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 30864491 - 30864447
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||    
T  30864491 aaagagaaatgatatttgtacaaccaatttgtgacaacttttgta 30864447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 35004185 - 35004130
Alignment:
Q  301 aaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    |||| ||| |||||||||||||| ||||| ||| ||| ||||||||||||||||||    
T  35004185 aaaacaagattgtcactaaagttgtcataaaatggatgtacaaatatcattgctct 35004130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 41985162 - 41985123
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttt 211  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  41985162 aagagaaatgatatttgtacaatcaatttgtgacaacttt 41985123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 3040410 - 3040456
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttgtataa 218  Q
    ||||||||| ||||||||| ||  |||||||||||||||||||||||    
T  3040410 aagagaaattatatttgtacaaccaatttgtgacaacttttgtataa 3040456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 29162236 - 29162166
Alignment:
Q  286 caataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    |||||| ||| ||| |||| ||| |||||||||||||| |||| ||||  || ||||||||||||||||||    
T  29162236 caataaaaagagagaaaaacaagattgtcactaaagttgtcatggaatgaatgtacaaatatcattgctct 29162166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 41227065 - 41227111
Alignment:
Q  172 aagagaaatgatatttgtataattaatttgtgacaacttttgtataa 218  Q
    |||||||||||||||| || ||||| |||||||||||||||| ||||    
T  41227065 aagagaaatgatatttatacaattattttgtgacaacttttggataa 41227111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 9944126 - 9944163
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttt 211  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  9944126 gagaaatgatatttatataagtaatttgtgacaacttt 9944163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 31274603 - 31274562
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  31274603 aaagagaaatgatatttgtacaaccaatttgtgacaactttt 31274562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 11751214 - 11751170
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||| |||| ||||||||| ||||| ||||||||||||||||||    
T  11751214 aaagaaaaattatatttgtacaattattttgtgacaacttttgta 11751170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 37325889 - 37325849
Alignment:
Q  175 agaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  37325889 agaaatgatatttgtacaaccaatttgtgacaacttttgta 37325849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 43255523 - 43255451
Alignment:
Q  287 aataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    ||||||||| ||| ||| |||| ||||||| ||| |||||||  | ||||| ||||||||||||| |||||||    
T  43255523 aataagaagagagaaaagtaagattgtcaccaaaattatcatcaattagatgtacaaatatcattactctttt 43255451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 2056894 - 2056970
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    ||||||||||||| |||  ||| |||||||||||||||||| |||| ||||  || |||||||||||||||||||||    
T  2056894 gaccaataagaagagagagaaacaaggttgtcactaaagttgtcatggaatgaatgtacaaatatcattgctctttt 2056970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 3660313 - 3660244
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattg 352  Q
    ||||||||| ||| ||| |||| |||||||||||||||||| |||| |||| ||| ||||||||||||||    
T  3660313 gaccaataaaaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattg 3660244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 17902652 - 17902581
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgct 354  Q
    ||||||||||||| ||| |||| ||  || ||||||||||| |||| |||||||| ||||||||||||||||    
T  17902652 gaccaataagaagagagaaaaacaatattatcactaaagttgtcatggaatagatgtacaaatatcattgct 17902581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 27334855 - 27334902
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgtataa 218  Q
    |||||||||||||||||||| || || |||||||||||||||||||||    
T  27334855 aaagagaaatgatatttgtacaactattttgtgacaacttttgtataa 27334902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 27395595 - 27395642
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgtataa 218  Q
    |||||||||||||||||||| || || |||||||||||||||||||||    
T  27395595 aaagagaaatgatatttgtacaactattttgtgacaacttttgtataa 27395642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 11017493 - 11017566
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    ||||||||||||| |||  ||| |||||||||||||||||| | || |||| ||| ||||||||||| ||||||    
T  11017493 gaccaataagaagagagagaaacaaggttgtcactaaagttgttatggaatggatgtacaaatatcactgctct 11017566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 3339459 - 3339388
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgct 354  Q
    ||||||||| ||| ||| |||| ||| |||||||||||||| ||||  ||| ||| ||||||||||||||||    
T  3339459 gaccaataaaaagagagaaaaacaagattgtcactaaagttgtcatgaaatggatgtacaaatatcattgct 3339388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 17902764 - 17902725
Alignment:
Q  173 agagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  17902764 agagaaatgatatttgtataactaatttatgacaactttt 17902725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 2056783 - 2056824
Alignment:
Q  174 gagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    ||||||||||||||||| ||  ||||||||||||||||||||    
T  2056783 gagaaatgatatttgtacaaccaatttgtgacaacttttgta 2056824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 15722577 - 15722536
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaactttt 212  Q
    |||||||||||||||||||| ||| | |||||||||||||||    
T  15722577 aaagagaaatgatatttgtacaatcattttgtgacaactttt 15722536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 30767341 - 30767300
Alignment:
Q  170 gaaagagaaatgatatttgtataattaatttgtgacaacttt 211  Q
    |||||||||||||||||||| ||| || ||||||||||||||    
T  30767341 gaaagagaaatgatatttgtttaactattttgtgacaacttt 30767300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 237358 - 237286
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||| ||| |||| || | |||||| |||||| ||||  ||||||| | |||||||||||||||    
T  237358 gaccaataagaagagagaaaaacaaagatgtcacaaaagttgtcattaaatagatgtccaaatatcattgctc 237286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 1803980 - 1804056
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctctttt 359  Q
    ||||||||||||| ||| |||| ||||||||||| |||||| ||||  | | ||| ||||||||||| | |||||||    
T  1803980 gaccaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactctttt 1804056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 3339573 - 3339529
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||| ||  | ||||||||||||||||||    
T  3339573 aaagagaaatgatatttgtacaaccattttgtgacaacttttgta 3339529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 12441535 - 12441575
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttt 211  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  12441535 aaagagaaatgatatttgtacaactactttgtgacaacttt 12441575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 15328600 - 15328672
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||| | ||| |||||||| || |||||||| |||||| ||||  ||| ||| |||||||||||||||||    
T  15328600 gaccaatcaaaagagaggaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatcattgctc 15328672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 27334975 - 27335043
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcatt 351  Q
    ||||||||| ||| ||| |||| |||||||||| ||||||| ||||  ||| ||| |||||||||||||    
T  27334975 gaccaataaaaagagagaaaaacaaggttgtcattaaagttgtcatgaaatggatgtacaaatatcatt 27335043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 27395715 - 27395783
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcatt 351  Q
    ||||||||| ||| ||| |||| |||||||||| ||||||| ||||  ||| ||| |||||||||||||    
T  27395715 gaccaataaaaagagagaaaaacaaggttgtcattaaagttgtcatgaaatggatgtacaaatatcatt 27395783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 88919 - 88994
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttt 358  Q
    ||||||||||||  ||  ||||||||||||||||||||||||||||   || ||| ||||||||||||||||||||    
T  88919 gaccaataagaaaagaaaaaaataaggttgtcactaaagttatcatgagatggatgtacaaatatcattgctcttt 88994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 1456 - 1383
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    ||||||||||||| ||| |||| || |||||||||||| || |||| |||| ||| ||||||||||||||||||    
T  1456 gaccaataagaagagagaaaaacaaagttgtcactaaaattgtcatggaatggatgtacaaatatcattgctct 1383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 1570 - 1526
Alignment:
Q  171 aaagagaaatgatatttgtataattaatttgtgacaacttttgta 215  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  1570 aaagagaaatgatatttgtataaccaatttgtgacaacttttgta 1526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 31260 - 31188
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||||||  ||| |||| || |||||||||||| |||||||  ||||||| |||||||||||||||||    
T  31260 gaccaataagaacagagaaaaacaaagttgtcactaaaattatcatgtaatagatgtacaaatatcattgctc 31188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 3472 - 3545
Alignment:
Q  283 gaccaataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctct 356  Q
    |||||||||||||  || ||||||||||||||||||||||| || |  |||  || ||||||||||||||||||    
T  3472 gaccaataagaagaaagaaaaataaggttgtcactaaagttgtcgtgaaatgaatgtacaaatatcattgctct 3545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 29897 - 29969
Alignment:
Q  286 caataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctcttt 358  Q
    |||||| ||| ||| |||| |||||||| ||||||||| ||||  ||| ||| |||||||||||||| |||||    
T  29897 caataaaaagagagaaaaacaaggttgtaactaaagttgtcattaaatggatgtacaaatatcattgatcttt 29969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 18710 - 18777
Alignment:
Q  287 aataagaagggaggaaaataaggttgtcactaaagttatcatagaatagatatacaaatatcattgctc 355  Q
    ||||||||  ||| ||||||||||| ||||||||||| || | |||| ||| |||||||||||||||||    
T  18710 aataagaatagagaaaaataaggttatcactaaagttgtc-tggaatggatgtacaaatatcattgctc 18777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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